This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4xbm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:43, 27 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==X-ray crystal structure of Notch ligand Delta-like 1==
==X-ray crystal structure of Notch ligand Delta-like 1==
-
<StructureSection load='4xbm' size='340' side='right' caption='[[4xbm]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+
<StructureSection load='4xbm' size='340' side='right'caption='[[4xbm]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4xbm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XBM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4xbm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XBM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xbm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xbm OCA], [http://pdbe.org/4xbm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xbm RCSB], [http://www.ebi.ac.uk/pdbsum/4xbm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xbm ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xbm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xbm OCA], [https://pdbe.org/4xbm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xbm RCSB], [https://www.ebi.ac.uk/pdbsum/4xbm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xbm ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
-
[[http://www.uniprot.org/uniprot/DLL1_HUMAN DLL1_HUMAN]] Septopreoptic holoprosencephaly;Semilobar holoprosencephaly;Lobar holoprosencephaly;Alobar holoprosencephaly;Midline interhemispheric variant of holoprosencephaly;Microform holoprosencephaly.
+
[https://www.uniprot.org/uniprot/DLL1_HUMAN DLL1_HUMAN] Septopreoptic holoprosencephaly;Semilobar holoprosencephaly;Lobar holoprosencephaly;Alobar holoprosencephaly;Midline interhemispheric variant of holoprosencephaly;Microform holoprosencephaly.
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DLL1_HUMAN DLL1_HUMAN]] Acts as a ligand for Notch receptors. Blocks the differentiation of progenitor cells into the B-cell lineage while promoting the emergence of a population of cells with the characteristics of a T-cell/NK-cell precursor.<ref>PMID:11581320</ref>
+
[https://www.uniprot.org/uniprot/DLL1_HUMAN DLL1_HUMAN] Acts as a ligand for Notch receptors. Blocks the differentiation of progenitor cells into the B-cell lineage while promoting the emergence of a population of cells with the characteristics of a T-cell/NK-cell precursor.<ref>PMID:11581320</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adam, T E]]
+
[[Category: Homo sapiens]]
-
[[Category: Burgess, A W]]
+
[[Category: Large Structures]]
-
[[Category: Church, N L]]
+
[[Category: Adam TE]]
-
[[Category: Kershaw, N J]]
+
[[Category: Burgess AW]]
-
[[Category: Luo, C S]]
+
[[Category: Church NL]]
-
[[Category: Ectodomain egf-like repeat ligand c2 domain]]
+
[[Category: Kershaw NJ]]
-
[[Category: Signaling protein]]
+
[[Category: Luo CS]]

Current revision

X-ray crystal structure of Notch ligand Delta-like 1

PDB ID 4xbm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools