5mg0

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==Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography==
==Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography==
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<StructureSection load='5mg0' size='340' side='right' caption='[[5mg0]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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<StructureSection load='5mg0' size='340' side='right'caption='[[5mg0]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5mg0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MG0 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5mg0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MG0 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mg0 OCA], [http://pdbe.org/5mg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mg0 RCSB], [http://www.ebi.ac.uk/pdbsum/5mg0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mg0 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mg0 OCA], [https://pdbe.org/5mg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mg0 RCSB], [https://www.ebi.ac.uk/pdbsum/5mg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mg0 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA]] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light.
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[https://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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X-ray crystallography at X-ray free-electron laser sources is a powerful method for studying macromolecules at biologically relevant temperatures. Moreover, when combined with complementary techniques like X-ray emission spectroscopy, both global structures and chemical properties of metalloenzymes can be obtained concurrently, providing insights into the interplay between the protein structure and dynamics and the chemistry at an active site. The implementation of such a multimodal approach can be compromised by conflicting requirements to optimize each individual method. In particular, the method used for sample delivery greatly affects the data quality. We present here a robust way of delivering controlled sample amounts on demand using acoustic droplet ejection coupled with a conveyor belt drive that is optimized for crystallography and spectroscopy measurements of photochemical and chemical reactions over a wide range of time scales. Studies with photosystem II, the phytochrome photoreceptor, and ribonucleotide reductase R2 illustrate the power and versatility of this method.
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Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.,Fuller FD, Gul S, Chatterjee R, Burgie ES, Young ID, Lebrette H, Srinivas V, Brewster AS, Michels-Clark T, Clinger JA, Andi B, Ibrahim M, Pastor E, de Lichtenberg C, Hussein R, Pollock CJ, Zhang M, Stan CA, Kroll T, Fransson T, Weninger C, Kubin M, Aller P, Lassalle L, Brauer P, Miller MD, Amin M, Koroidov S, Roessler CG, Allaire M, Sierra RG, Docker PT, Glownia JM, Nelson S, Koglin JE, Zhu D, Chollet M, Song S, Lemke H, Liang M, Sokaras D, Alonso-Mori R, Zouni A, Messinger J, Bergmann U, Boal AK, Bollinger JM Jr, Krebs C, Hogbom M, Phillips GN Jr, Vierstra RD, Sauter NK, Orville AM, Kern J, Yachandra VK, Yano J Nat Methods. 2017 Feb 27. doi: 10.1038/nmeth.4195. PMID:28250468<ref>PMID:28250468</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5mg0" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Histidine kinase]]
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[[Category: Deinococcus radiodurans R1]]
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[[Category: Aller, P]]
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[[Category: Large Structures]]
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[[Category: Alonso-Mori, R]]
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[[Category: Aller P]]
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[[Category: Braeuer, P]]
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[[Category: Alonso-Mori R]]
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[[Category: Brewster, A S]]
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[[Category: Braeuer P]]
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[[Category: Burgie, E S]]
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[[Category: Brewster AS]]
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[[Category: Clinger, J]]
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[[Category: Burgie ES]]
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[[Category: Fuller, F D]]
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[[Category: Clinger J]]
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[[Category: Gul, S]]
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[[Category: Fuller FD]]
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[[Category: Hutchison, C]]
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[[Category: Gul S]]
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[[Category: Kern, J]]
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[[Category: Hutchison C]]
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[[Category: Miller, M D]]
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[[Category: Kern J]]
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[[Category: Orville, A M]]
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[[Category: Miller MD]]
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[[Category: Phillips, G N]]
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[[Category: Orville AM]]
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[[Category: Sauter, N K]]
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[[Category: Phillips Jr GN]]
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[[Category: Vierstra, R D]]
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[[Category: Sauter NK]]
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[[Category: Yachandra, V K]]
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[[Category: Vierstra RD]]
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[[Category: Yano, J]]
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[[Category: Yachandra VK]]
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[[Category: Young, I D]]
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[[Category: Yano J]]
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[[Category: Bilin]]
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[[Category: Young ID]]
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[[Category: Photoreceptor]]
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[[Category: Phytochrome]]
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[[Category: Sfx]]
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[[Category: Transferase]]
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Current revision

Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography

PDB ID 5mg0

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