This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5bp9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:51, 17 January 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of SAM-dependent methyltransferase from Bacteroides fragilis in complex with S-Adenosyl-L-homocysteine==
==Crystal structure of SAM-dependent methyltransferase from Bacteroides fragilis in complex with S-Adenosyl-L-homocysteine==
-
<StructureSection load='5bp9' size='340' side='right' caption='[[5bp9]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='5bp9' size='340' side='right'caption='[[5bp9]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5bp9]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BP9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5bp9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_NCTC_9343 Bacteroides fragilis NCTC 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BP9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ETE:2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL'>ETE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5bp7|5bp7]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bp9 OCA], [https://pdbe.org/5bp9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bp9 RCSB], [https://www.ebi.ac.uk/pdbsum/5bp9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bp9 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bp9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bp9 OCA], [http://pdbe.org/5bp9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bp9 RCSB], [http://www.ebi.ac.uk/pdbsum/5bp9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bp9 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5LFK0_BACFN Q5LFK0_BACFN]
==See Also==
==See Also==
-
*[[SAM-dependent methyltransferase|SAM-dependent methyltransferase]]
+
*[[SAM-dependent methyltrasferase 3D structures|SAM-dependent methyltrasferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Almo, S C]]
+
[[Category: Bacteroides fragilis NCTC 9343]]
-
[[Category: Bonanno, J]]
+
[[Category: Large Structures]]
-
[[Category: Cymborowski, M T]]
+
[[Category: Almo SC]]
-
[[Category: Gasiorowska, O A]]
+
[[Category: Bonanno J]]
-
[[Category: Handing, K B]]
+
[[Category: Cymborowski MT]]
-
[[Category: Mason, D V]]
+
[[Category: Gasiorowska OA]]
-
[[Category: Minor, W]]
+
[[Category: Handing KB]]
-
[[Category: Structural genomic]]
+
[[Category: Mason DV]]
-
[[Category: Seidel, R]]
+
[[Category: Minor W]]
-
[[Category: Shabalin, I G]]
+
[[Category: Seidel R]]
-
[[Category: Nysgrc]]
+
[[Category: Shabalin IG]]
-
[[Category: Psi-biology]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of SAM-dependent methyltransferase from Bacteroides fragilis in complex with S-Adenosyl-L-homocysteine

PDB ID 5bp9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools