5x5h

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==Crystal strcuture of metB from Corynebacterium glutamicum==
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==Crystal structure of metB from Corynebacterium glutamicum==
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<StructureSection load='5x5h' size='340' side='right' caption='[[5x5h]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
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<StructureSection load='5x5h' size='340' side='right'caption='[[5x5h]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5x5h]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X5H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X5H FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5x5h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum_ATCC_13032 Corynebacterium glutamicum ATCC 13032]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X5H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X5H FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.51&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cystathionine_gamma-synthase Cystathionine gamma-synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.48 2.5.1.48] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x5h OCA], [http://pdbe.org/5x5h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x5h RCSB], [http://www.ebi.ac.uk/pdbsum/5x5h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x5h ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x5h OCA], [https://pdbe.org/5x5h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x5h RCSB], [https://www.ebi.ac.uk/pdbsum/5x5h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x5h ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q79VD9_CORGL Q79VD9_CORGL]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cystathionine gamma-synthase (MetB) condenses O-acetyl-l-homoserine (OAHS) or O-succinyl-l-homoserine (OSHS) with cysteine to produce cystathionine. To investigate the molecular mechanisms and substrate specificity of MetB from Corynebacterium glutamicum (CgMetB), we determined its crystal structure at 1.5 A resolution. The pyridoxal phosphate cofactor is covalently bound to Lys204 via a Schiff base linkage in the deep cavity. Superposition with the structure of MetB from Nicotiana tabacum in complex with its inhibitor dl-(E)-2-amino-5-phosphono-3-pentenoic acid revealed that Thr347 from the beta10-beta11 connecting loop, located at the entrance of the active site, is speculated to be a main contributor for stabilization of the acetyl group of OAHS. Moreover, on the basis of structural comparison of CgMetB with EcMetB utilizing OSHS as a main substrate, we propose that the conformation of the beta10-beta11 connecting loops determines the size and shape of the acetyl- or succinyl-group binding site and ultimately determines the substrate specificity of MetBs toward OAHS or OSHS.
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Structural Insights into Substrate Specificity of Cystathionine gamma-Synthase from Corynebacterium glutamicum.,Sagong HY, Kim KJ J Agric Food Chem. 2017 Jul 26;65(29):6002-6008. doi: 10.1021/acs.jafc.7b02391., Epub 2017 Jul 13. PMID:28675039<ref>PMID:28675039</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5x5h" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Cystathionine gamma synthase|Cystathionine gamma synthase]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Cystathionine gamma-synthase]]
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[[Category: Corynebacterium glutamicum ATCC 13032]]
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[[Category: Kim, K J]]
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[[Category: Large Structures]]
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[[Category: Sagong, H Y]]
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[[Category: Kim K-J]]
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[[Category: Plp-binding domain]]
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[[Category: Sagong H-Y]]
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[[Category: Transferase]]
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Current revision

Crystal structure of metB from Corynebacterium glutamicum

PDB ID 5x5h

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