1tik

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:31, 21 November 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1tik.gif|left|200px]]
 
-
{{Structure
+
==CRYSTAL STRUCTURE OF ACYL CARRIER PROTEIN PHOSPHODIESTERASE==
-
|PDB= 1tik |SIZE=350|CAPTION= <scene name='initialview01'>1tik</scene>, resolution 2.30&Aring;
+
<StructureSection load='1tik' size='340' side='right'caption='[[1tik]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[1tik]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TIK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TIK FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/[Acyl-carrier-protein]_phosphodiesterase [Acyl-carrier-protein] phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.14 3.1.4.14] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
|GENE= ACPD, B1412 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK00170 PRK00170]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tik FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tik OCA], [https://pdbe.org/1tik PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tik RCSB], [https://www.ebi.ac.uk/pdbsum/1tik PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tik ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1tik TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tik FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tik OCA], [http://www.ebi.ac.uk/pdbsum/1tik PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1tik RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/AZOR_ECOLI AZOR_ECOLI] Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity. The enzyme can reduce ethyl red and methyl red, but is not able to convert sulfonated azo dyes.<ref>PMID:2168383</ref>
-
 
+
== Evolutionary Conservation ==
-
'''CRYSTAL STRUCTURE OF ACYL CARRIER PROTEIN PHOSPHODIESTERASE'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ti/1tik_consurf.spt"</scriptWhenChecked>
-
1TIK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TIK OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tik ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: [Acyl-carrier-protein] phosphodiesterase]]
+
[[Category: Burley SK]]
-
[[Category: Burley, S K.]]
+
[[Category: Kniewel R]]
-
[[Category: Kniewel, R.]]
+
[[Category: Lima CD]]
-
[[Category: Lima, C D.]]
+
[[Category: Rajashankar KR]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Solorzano V]]
-
[[Category: Rajashankar, K R.]]
+
-
[[Category: Solorzano, V.]]
+
-
[[Category: acpd]]
+
-
[[Category: hydrolase]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: t1480]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:56:31 2008''
+

Current revision

CRYSTAL STRUCTURE OF ACYL CARRIER PROTEIN PHOSPHODIESTERASE

PDB ID 1tik

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1tik"
Personal tools