|
|
(2 intermediate revisions not shown.) |
Line 1: |
Line 1: |
| | | |
| ==Structure of a human VH antibody domain binding to the cleft of hen egg lysozyme== | | ==Structure of a human VH antibody domain binding to the cleft of hen egg lysozyme== |
- | <StructureSection load='4u3x' size='340' side='right' caption='[[4u3x]], [[Resolution|resolution]] 2.26Å' scene=''> | + | <StructureSection load='4u3x' size='340' side='right'caption='[[4u3x]], [[Resolution|resolution]] 2.26Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4u3x]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U3X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4U3X FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4u3x]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U3X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U3X FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.26Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4pgj|4pgj]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u3x OCA], [https://pdbe.org/4u3x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u3x RCSB], [https://www.ebi.ac.uk/pdbsum/4u3x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u3x ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4u3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u3x OCA], [http://pdbe.org/4u3x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4u3x RCSB], [http://www.ebi.ac.uk/pdbsum/4u3x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4u3x ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref> | + | [https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 22: |
Line 21: |
| | | |
| ==See Also== | | ==See Also== |
- | *[[3D structures of antibody|3D structures of antibody]] | + | *[[Antibody 3D structures|Antibody 3D structures]] |
| + | *[[Lysozyme 3D structures|Lysozyme 3D structures]] |
| + | *[[3D structures of human antibody|3D structures of human antibody]] |
| == References == | | == References == |
| <references/> | | <references/> |
Line 28: |
Line 29: |
| </StructureSection> | | </StructureSection> |
| [[Category: Gallus gallus]] | | [[Category: Gallus gallus]] |
- | [[Category: Lysozyme]] | + | [[Category: Homo sapiens]] |
- | [[Category: Christ, D]] | + | [[Category: Large Structures]] |
- | [[Category: Langley, D B]] | + | [[Category: Christ D]] |
- | [[Category: Rouet, R]] | + | [[Category: Langley DB]] |
- | [[Category: Antibody-antigen complex structure]] | + | [[Category: Rouet R]] |
- | [[Category: Human vh domain antibody]]
| + | |
- | [[Category: Hydrolase-immune system complex]]
| + | |
- | [[Category: Immune system]]
| + | |
- | [[Category: Phage display]]
| + | |
| Structural highlights
Function
LYSC_CHICK Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.[1]
Publication Abstract from PubMed
Human VH single domains represent a promising class of antibody fragments with applications as therapeutic modalities. Unfortunately, isolated human VH domains also generally display poor biophysical properties and a propensity to aggregate. This has encouraged the development of non-human antibody domains as alternative means of antigen recognition and, in particular, camelid (VHH) domains. Naturally devoid of light chain partners, these domains are characterized by favourable biophysical properties and propensity for cleft binding, a highly desirable characteristic, allowing the targeting of cryptic epitopes. In contrast, previously reported structures of human VH single domains had failed to recapitulate this property. Here we report the engineering and characterization of phage display libraries of stable human VH domains, and the selection of binders against a diverse set of antigens. Unlike "camelized" human domains, the domains do not rely on potentially immunogenic framework mutations and maintain the structure of the VH/VL interface. Structure determination in complex with hen egg-white lysozyme revealed an extended VH binding interface, with complementarity determining region 3 (CDR3) deeply penetrating into the active site cleft, highly reminiscent to what has been observed for camelid domains. Taken together, our results demonstrate that fully human VH domains can be constructed that are not only stable and well-expressed, but also rival the cleft binding properties of camelid antibodies.
Fully human VH single domains that rival the stability and cleft recognition of camelid antibodies.,Rouet R, Dudgeon K, Christie M, Langley D, Christ D J Biol Chem. 2015 Mar 3. pii: jbc.M114.614842. PMID:25737448[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Maehashi K, Matano M, Irisawa T, Uchino M, Kashiwagi Y, Watanabe T. Molecular characterization of goose- and chicken-type lysozymes in emu (Dromaius novaehollandiae): evidence for extremely low lysozyme levels in emu egg white. Gene. 2012 Jan 15;492(1):244-9. doi: 10.1016/j.gene.2011.10.021. Epub 2011 Oct, 25. PMID:22044478 doi:10.1016/j.gene.2011.10.021
- ↑ Rouet R, Dudgeon K, Christie M, Langley D, Christ D. Fully human VH single domains that rival the stability and cleft recognition of camelid antibodies. J Biol Chem. 2015 Mar 3. pii: jbc.M114.614842. PMID:25737448 doi:http://dx.doi.org/10.1074/jbc.M114.614842
|