This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5te5
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 1: | Line 1: | ||
==Crystal structure of Bos taurus opsin regenerated with 6-carbon ring retinal chromophore== | ==Crystal structure of Bos taurus opsin regenerated with 6-carbon ring retinal chromophore== | ||
| - | <StructureSection load='5te5' size='340' side='right' caption='[[5te5]], [[Resolution|resolution]] 4.01Å' scene=''> | + | <StructureSection load='5te5' size='340' side='right'caption='[[5te5]], [[Resolution|resolution]] 4.01Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5te5]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5te5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TE5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TE5 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7AB:(2E)-{(4E)-4-[(3E)-4-(2,6,6-TRIMETHYLCYCLOHEX-1-EN-1-YL)BUT-3-EN-2-YLIDENE]CYCLOHEX-2-EN-1-YLIDENE}ACETALDEHYDE'>7AB</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.01Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7AB:(2E)-{(4E)-4-[(3E)-4-(2,6,6-TRIMETHYLCYCLOHEX-1-EN-1-YL)BUT-3-EN-2-YLIDENE]CYCLOHEX-2-EN-1-YLIDENE}ACETALDEHYDE'>7AB</scene>, <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5te5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5te5 OCA], [https://pdbe.org/5te5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5te5 RCSB], [https://www.ebi.ac.uk/pdbsum/5te5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5te5 ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/OPSD_BOVIN OPSD_BOVIN] Photoreceptor required for image-forming vision at low light intensity. Required for photoreceptor cell viability after birth. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change leading to G-protein activation and release of all-trans retinal (By similarity).<ref>PMID:16908857</ref> <ref>PMID:17060607</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 20: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 5te5" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5te5" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Rhodopsin 3D structures|Rhodopsin 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
| Line 25: | Line 27: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bos taurus]] | [[Category: Bos taurus]] | ||
| - | [[Category: Banerjee | + | [[Category: Large Structures]] |
| - | [[Category: Gulati | + | [[Category: Banerjee S]] |
| - | [[Category: Katayama | + | [[Category: Gulati S]] |
| - | [[Category: Kiser | + | [[Category: Katayama K]] |
| - | [[Category: Palczewski | + | [[Category: Kiser PD]] |
| - | + | [[Category: Palczewski K]] | |
Current revision
Crystal structure of Bos taurus opsin regenerated with 6-carbon ring retinal chromophore
| |||||||||||
