5urf

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{{Large structure}}
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==The structure of human bocavirus 1==
==The structure of human bocavirus 1==
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<StructureSection load='5urf' size='340' side='right' caption='[[5urf]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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<SX load='5urf' size='340' side='right' viewer='molstar' caption='[[5urf]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5urf]] is a 60 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5URF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5URF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5urf]] is a 60 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_bocavirus_1 Human bocavirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5URF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5URF FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5us7|5us7]], [[5us9|5us9]]</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5urf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5urf OCA], [http://pdbe.org/5urf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5urf RCSB], [http://www.ebi.ac.uk/pdbsum/5urf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5urf ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5urf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5urf OCA], [https://pdbe.org/5urf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5urf RCSB], [https://www.ebi.ac.uk/pdbsum/5urf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5urf ProSAT]</span></td></tr>
</table>
</table>
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{{Large structure}}
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_HBOC1 CAPSD_HBOC1] Capsid proteins self-assembles to form an icosahedral capsid with a T=1 symmetry, about 26 nm in diameter, and consisting of 60 copies of three size variants of the capsid proteins, VP1, and VP3, which differ by the presence of an N-terminal extension in the minor protein VP1 (Probable). The capsid has a channel at the 5-fold axis and there are densities extending the 5-fold axis into the interior of the capsid (PubMed:28331084). The capsid encapsulates the genomic ssDNA (Probable). Binding to the host receptors also induces capsid rearrangements leading to surface exposure of VP1 N-terminus, specifically its phospholipase A2-like region. The additional N-terminal region of isoform Minor capsid protein VP1, called VP1u, may serve as a lipolytic enzyme to breach the endosomal membrane during entry into host cell and might contribute to virus transport to the nucleus (By similarity).[UniProtKB:Q9PZT0]<ref>PMID:28331084</ref> <ref>PMID:28331084</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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<references/>
<references/>
__TOC__
__TOC__
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</StructureSection>
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</SX>
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[[Category: Agbandje-McKenna, M]]
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[[Category: Human bocavirus 1]]
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[[Category: Baker, T]]
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[[Category: Large Structures]]
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[[Category: Chipman, P]]
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[[Category: Agbandje-McKenna M]]
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[[Category: Garrison, J]]
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[[Category: Baker T]]
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[[Category: Ilyas, M]]
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[[Category: Chipman P]]
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[[Category: Jansen, M]]
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[[Category: Garrison J]]
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[[Category: Kailasan, S]]
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[[Category: Ilyas M]]
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[[Category: Kandola, K]]
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[[Category: Jansen M]]
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[[Category: McKenna, R]]
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[[Category: Kailasan S]]
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[[Category: Mietzsch, M]]
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[[Category: Kandola K]]
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[[Category: Soderlund-Venermo, M]]
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[[Category: McKenna R]]
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[[Category: Sousa, D]]
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[[Category: Mietzsch M]]
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[[Category: Spear, J]]
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[[Category: Soderlund-Venermo M]]
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[[Category: Hbov1]]
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[[Category: Sousa D]]
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[[Category: Human parvovirus 1]]
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[[Category: Spear J]]
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[[Category: Parvovirus]]
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[[Category: Respiratory tract infection]]
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[[Category: Virus like particle]]
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Current revision

The structure of human bocavirus 1

5urf, resolution 2.90Å

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