5nfq

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(New page: '''Unreleased structure''' The entry 5nfq is ON HOLD until Paper Publication Authors: Ferrandi, E.E., De Rose, S.A., Sayer, C., Guazzelli, E., Marchesi, C., Saneei, V., Isupov, M.N., Li...)
Current revision (12:54, 15 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5nfq is ON HOLD until Paper Publication
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==Novel epoxide hydrolases belonging to the alpha/beta hydrolases superfamily in metagenomes from hot environments==
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<StructureSection load='5nfq' size='340' side='right'caption='[[5nfq]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5nfq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Metagenome Metagenome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NFQ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nfq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfq OCA], [https://pdbe.org/5nfq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nfq RCSB], [https://www.ebi.ac.uk/pdbsum/5nfq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfq ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Two novel epoxide hydrolases (EHs), Sibe-EH and CH65-EH, were identified in the metagenomes of samples collected in hot springs in Russia and China, respectively. The two alpha/beta hydrolase superfamily fold enzymes were cloned, over-expressed in Escherichia coli, purified and characterized. The new EHs were active toward a broad range of substrates, and in particular, Sibe-EH was excellent in the desymmetrization of cis-2,3-epoxybutane producing the (2R,3R)-diol product with ee exceeding 99%. Interestingly these enzymes also hydrolyse (4R)-limonene-1,2-epoxide with Sibe-EH being specific for the trans isomer. The Sibe-EH is a monomer in solution whereas the CH65-EH is a dimer. Both enzymes showed high melting temperatures with the CH65-EH being the highest at 85 degrees C retaining 80% of its initial activity after 3 h thermal treatment at 70 degrees C making it the most thermal tolerant wild type epoxide hydrolase described. The Sibe-EH and CH65-EH have been crystallized and their structures determined to high resolution, 1.6 and 1.4 A, respectively. The CH65-EH enzyme forms a dimer via its cap domains with different relative orientation of the monomers compared to previously described EHs. The entrance to the active site cavity is located in a different position in CH65-EH and Sibe-EH in relation to other known bacterial and mammalian EHs.
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Authors: Ferrandi, E.E., De Rose, S.A., Sayer, C., Guazzelli, E., Marchesi, C., Saneei, V., Isupov, M.N., Littlechild, J.A., Monti, D.
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New Thermophilic alpha/beta Class Epoxide Hydrolases Found in Metagenomes From Hot Environments.,Ferrandi EE, Sayer C, De Rose SA, Guazzelli E, Marchesi C, Saneei V, Isupov MN, Littlechild JA, Monti D Front Bioeng Biotechnol. 2018 Oct 16;6:144. doi: 10.3389/fbioe.2018.00144., eCollection 2018. PMID:30386778<ref>PMID:30386778</ref>
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Description: Novel epoxide hydrolases belonging to the alpha/beta hydrolases superfamily in metagenomes from hot environments
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Monti, D]]
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<div class="pdbe-citations 5nfq" style="background-color:#fffaf0;"></div>
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[[Category: Isupov, M.N]]
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[[Category: Guazzelli, E]]
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==See Also==
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[[Category: Ferrandi, E.E]]
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*[[Epoxide hydrolase 3D structures|Epoxide hydrolase 3D structures]]
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[[Category: Littlechild, J.A]]
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== References ==
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[[Category: Marchesi, C]]
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<references/>
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[[Category: Saneei, V]]
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__TOC__
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[[Category: Sayer, C]]
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</StructureSection>
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[[Category: De Rose, S.A]]
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[[Category: Large Structures]]
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[[Category: Metagenome]]
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[[Category: De Rose SA]]
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[[Category: Ferrandi EE]]
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[[Category: Guazzelli E]]
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[[Category: Isupov MN]]
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[[Category: Littlechild JA]]
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[[Category: Marchesi C]]
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[[Category: Monti D]]
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[[Category: Saneei V]]
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[[Category: Sayer C]]

Current revision

Novel epoxide hydrolases belonging to the alpha/beta hydrolases superfamily in metagenomes from hot environments

PDB ID 5nfq

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