5nfz

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(New page: '''Unreleased structure''' The entry 5nfz is ON HOLD Authors: Field, J.J., Pera, B., Estevez Gallego, J., Calvo, E., Rodriguez-Salarichs, J., Saez-Calvo, G., Zuwerra, D., Jordi, M., Pro...)
Current revision (12:54, 15 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5nfz is ON HOLD
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==TUBULIN-MTC complex==
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<StructureSection load='5nfz' size='340' side='right'caption='[[5nfz]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5nfz]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus], [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NFZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8WB:2-methoxy-5-(2,3,4-trimethoxyphenyl)cyclohepta-2,4,6-trien-1-one'>8WB</scene>, <scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nfz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfz OCA], [https://pdbe.org/5nfz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nfz RCSB], [https://www.ebi.ac.uk/pdbsum/5nfz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TBA1B_BOVIN TBA1B_BOVIN] Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The marine natural product zampanolide and analogues thereof constitute a new chemotype of taxoid site microtubule-stabilizing agents with a covalent mechanism of action. Zampanolide-ligated tubulin has the switch-activation loop (M-loop) in the assembly prone form and, thus, represents an assembly activated state of the protein. In this study, we have characterized the biochemical properties of the covalently modified, activated tubulin dimer, and we have determined the effect of zampanolide on tubulin association and the binding of tubulin ligands at other binding sites. Tubulin activation by zampanolide does not affect its longitudinal oligomerization but does alter its lateral association properties. The covalent binding of zampanolide to beta-tubulin affects both the colchicine site, causing a change of the quantum yield of the bound ligand, and the exchangeable nucleotide binding site, reducing the affinity for the nucleotide. While these global effects do not change the binding affinity of 2-methoxy-5-(2,3,4-trimethoxyphenyl)-2,4,6-cycloheptatrien-1-one (MTC) (a reversible binder of the colchicine site), the binding affinity of a fluorescent analogue of GTP (Mant-GTP) at the nucleotide E-site is reduced from 12 +/- 2 x 105 M-1 in the case of unmodified tubulin to 1.4 +/- 0.3 x 105 M-1 in the case of the zampanolide tubulin adduct, indicating signal transmission between the taxane site and the colchicine and nucleotide sites of beta-tubulin.
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Authors: Field, J.J., Pera, B., Estevez Gallego, J., Calvo, E., Rodriguez-Salarichs, J., Saez-Calvo, G., Zuwerra, D., Jordi, M., Prota, A.E., Menchon, G., Miller, J.H., Altmann, K.-H., Diaz, J.F.
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Zampanolide Binding to Tubulin Indicates Cross-Talk of Taxane Site with Colchicine and Nucleotide Sites.,Field JJ, Pera B, Gallego JE, Calvo E, Rodriguez-Salarichs J, Saez-Calvo G, Zuwerra D, Jordi M, Andreu JM, Prota AE, Menchon G, Miller JH, Altmann KH, Diaz JF J Nat Prod. 2017 Oct 12. doi: 10.1021/acs.jnatprod.7b00704. PMID:29023132<ref>PMID:29023132</ref>
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Description: TUBULIN-MTC complex
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Altmann, K.-H]]
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<div class="pdbe-citations 5nfz" style="background-color:#fffaf0;"></div>
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[[Category: Zuwerra, D]]
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[[Category: Jordi, M]]
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==See Also==
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[[Category: Field, J.J]]
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*[[Stathmin-4 3D structures|Stathmin-4 3D structures]]
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[[Category: Prota, A.E]]
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*[[Tubulin 3D Structures|Tubulin 3D Structures]]
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[[Category: Miller, J.H]]
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*[[Tubulin tyrosine ligase|Tubulin tyrosine ligase]]
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[[Category: Estevez Gallego, J]]
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== References ==
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[[Category: Menchon, G]]
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<references/>
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[[Category: Calvo, E]]
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__TOC__
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[[Category: Pera, B]]
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</StructureSection>
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[[Category: Diaz, J.F]]
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[[Category: Bos taurus]]
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[[Category: Rodriguez-Salarichs, J]]
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[[Category: Gallus gallus]]
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[[Category: Saez-Calvo, G]]
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[[Category: Large Structures]]
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[[Category: Rattus norvegicus]]
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[[Category: Altmann K-H]]
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[[Category: Calvo E]]
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[[Category: Diaz JF]]
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[[Category: Estevez Gallego J]]
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[[Category: Field JJ]]
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[[Category: Jordi M]]
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[[Category: Menchon G]]
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[[Category: Miller JH]]
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[[Category: Pera B]]
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[[Category: Prota AE]]
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[[Category: Rodriguez-Salarichs J]]
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[[Category: Saez-Calvo G]]
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[[Category: Zuwerra D]]

Current revision

TUBULIN-MTC complex

PDB ID 5nfz

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