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5ng7
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==Novel epoxide hydrolases belonging to the alpha/beta hydrolases superfamily in metagenomes from hot environments== | |
| + | <StructureSection load='5ng7' size='340' side='right'caption='[[5ng7]], [[Resolution|resolution]] 1.39Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5ng7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Metagenome Metagenome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NG7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NG7 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.39Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SER:SERINE'>SER</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ng7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ng7 OCA], [https://pdbe.org/5ng7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ng7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ng7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ng7 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Two novel epoxide hydrolases (EHs), Sibe-EH and CH65-EH, were identified in the metagenomes of samples collected in hot springs in Russia and China, respectively. The two alpha/beta hydrolase superfamily fold enzymes were cloned, over-expressed in Escherichia coli, purified and characterized. The new EHs were active toward a broad range of substrates, and in particular, Sibe-EH was excellent in the desymmetrization of cis-2,3-epoxybutane producing the (2R,3R)-diol product with ee exceeding 99%. Interestingly these enzymes also hydrolyse (4R)-limonene-1,2-epoxide with Sibe-EH being specific for the trans isomer. The Sibe-EH is a monomer in solution whereas the CH65-EH is a dimer. Both enzymes showed high melting temperatures with the CH65-EH being the highest at 85 degrees C retaining 80% of its initial activity after 3 h thermal treatment at 70 degrees C making it the most thermal tolerant wild type epoxide hydrolase described. The Sibe-EH and CH65-EH have been crystallized and their structures determined to high resolution, 1.6 and 1.4 A, respectively. The CH65-EH enzyme forms a dimer via its cap domains with different relative orientation of the monomers compared to previously described EHs. The entrance to the active site cavity is located in a different position in CH65-EH and Sibe-EH in relation to other known bacterial and mammalian EHs. | ||
| - | + | New Thermophilic alpha/beta Class Epoxide Hydrolases Found in Metagenomes From Hot Environments.,Ferrandi EE, Sayer C, De Rose SA, Guazzelli E, Marchesi C, Saneei V, Isupov MN, Littlechild JA, Monti D Front Bioeng Biotechnol. 2018 Oct 16;6:144. doi: 10.3389/fbioe.2018.00144., eCollection 2018. PMID:30386778<ref>PMID:30386778</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5ng7" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | |
| - | [[Category: Guazzelli | + | ==See Also== |
| - | [[Category: | + | *[[Epoxide hydrolase 3D structures|Epoxide hydrolase 3D structures]] |
| - | [[Category: Littlechild | + | == References == |
| - | [[Category: Marchesi | + | <references/> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| + | [[Category: Metagenome]] | ||
| + | [[Category: De Rose SA]] | ||
| + | [[Category: Ferrandi EE]] | ||
| + | [[Category: Guazzelli E]] | ||
| + | [[Category: Isupov MN]] | ||
| + | [[Category: Littlechild JA]] | ||
| + | [[Category: Marchesi C]] | ||
| + | [[Category: Monti D]] | ||
| + | [[Category: Saneei V]] | ||
| + | [[Category: Sayer C]] | ||
Current revision
Novel epoxide hydrolases belonging to the alpha/beta hydrolases superfamily in metagenomes from hot environments
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Categories: Large Structures | Metagenome | De Rose SA | Ferrandi EE | Guazzelli E | Isupov MN | Littlechild JA | Marchesi C | Monti D | Saneei V | Sayer C
