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5ngn
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5ngn is ON HOLD until Paper Publication Authors: Lei, J., Tan, W.L., Sakai, N., Hilgenfeld, R. Description: Lybatide 2, a cystine-rich peptide from...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Lybatide 2, a cystine-rich peptide from Lycium barbarum== | |
| + | <StructureSection load='5ngn' size='340' side='right'caption='[[5ngn]], [[Resolution|resolution]] 1.48Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5ngn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lycium_barbarum Lycium barbarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NGN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NGN FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.48Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCN:ACETONITRILE'>CCN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ngn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ngn OCA], [https://pdbe.org/5ngn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ngn RCSB], [https://www.ebi.ac.uk/pdbsum/5ngn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ngn ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A2D0TC93_LYCBA A0A2D0TC93_LYCBA] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Cysteine-rich peptides (CRPs) of 2-6 kDa are generally thermally and proteolytically stable because of their multiple cross-bracing disulfide bonds. Here, we report the discovery and characterization of two novel cystine-stapled CRPs, designated lybatide 1 and 2 (lyba1 and lyba2), from the cortex of Lycium barbarum root. Lybatides, 32 to 33 amino acids in length, are hyperstable and display a novel disulfide connectivity with a cysteine motif of C-C-C-C-CC-CC which contains two pairs of adjacent cysteines (-CC-CC). X-ray structure analysis revealed the presence of a single cystine-stabilized (alpha + pi)-helix in lyba2, a rare feature of CRPs. Together, our results suggest that lybatides, one of the smallest four-disulfide-constrained plant CRPs, is a new family of CRPs. Additionally, this study provides new insights into the molecular diversity of plant cysteine-rich peptides and the unusual lybatide scaffold could be developed as a useful template for peptide engineering and therapeutic development. | ||
| - | + | Lybatides from Lycium barbarum Contain An Unusual Cystine-stapled Helical Peptide Scaffold.,Tan WL, Wong KH, Lei J, Sakai N, Tan HW, Hilgenfeld R, Tam JP Sci Rep. 2017 Jul 12;7(1):5194. doi: 10.1038/s41598-017-05037-1. PMID:28701689<ref>PMID:28701689</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Hilgenfeld | + | <div class="pdbe-citations 5ngn" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| - | [[Category: | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Lycium barbarum]] | ||
| + | [[Category: Hilgenfeld R]] | ||
| + | [[Category: Lei J]] | ||
| + | [[Category: Sakai N]] | ||
| + | [[Category: Tan WL]] | ||
Current revision
Lybatide 2, a cystine-rich peptide from Lycium barbarum
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