5xar
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5xar is ON HOLD until Paper Publication Authors: Jin, M.S., Kim, J.W., Kim, S., Kim, S., Lee, H., Lee, J.-O. Description: Structural insights into ...) |
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- | '''Unreleased structure''' | ||
- | + | ==Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS== | |
+ | <StructureSection load='5xar' size='340' side='right'caption='[[5xar]], [[Resolution|resolution]] 3.62Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5xar]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XAR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XAR FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.62Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xar OCA], [https://pdbe.org/5xar PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xar RCSB], [https://www.ebi.ac.uk/pdbsum/5xar PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xar ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/CITN_KLEPN CITN_KLEPN] Uptake of citrate across the boundary membrane with the concomitant uptake of a sodium ion (symport system). | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The sodium-dependent citrate transporter of Klebsiella pneumoniae (KpCitS) belongs to the 2-hydroxycarboxylate transporter (2-HCT) family and allows the cell to use citrate as sole carbon and energy source in anaerobic conditions. Here we present crystal structures of KpCitS in citrate-bound outward-facing, citrate-bound asymmetric, and citrate-free inward-facing state. The structures reveal that the KpCitS dimerization domain remains stationary throughout the transport cycle due to a hydrogen bond network as well as extensive hydrophobic interactions. In contrast, its transport domain undergoes a ~35 degrees rigid-body rotation and a ~17 A translocation perpendicular to the membrane to expose the substrate-binding site alternately to either side of the membrane. Furthermore, homology models of two other 2-HCT proteins based on the KpCitS structure offer structural insights into their differences in substrate specificity at a molecular level. On the basis of our results and previous biochemical data, we propose that the activity of the 2-HCT CitS involves an elevator-like movement in which the transport domain itself traverses the lipid bilayer, carrying the substrate into the cell in a sodium-dependent manner. | ||
- | + | Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS.,Kim JW, Kim S, Kim S, Lee H, Lee JO, Jin MS Sci Rep. 2017 May 31;7(1):2548. doi: 10.1038/s41598-017-02794-x. PMID:28566738<ref>PMID:28566738</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 5xar" style="background-color:#fffaf0;"></div> |
- | [[Category: Kim | + | |
- | [[Category: | + | ==See Also== |
- | [[Category: | + | *[[Symporter 3D structures|Symporter 3D structures]] |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Klebsiella pneumoniae]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Jin MS]] | ||
+ | [[Category: Kim JW]] | ||
+ | [[Category: Kim S]] | ||
+ | [[Category: Lee H]] | ||
+ | [[Category: Lee J-O]] |
Current revision
Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
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Categories: Klebsiella pneumoniae | Large Structures | Jin MS | Kim JW | Kim S | Lee H | Lee J-O