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5xbr

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(New page: '''Unreleased structure''' The entry 5xbr is ON HOLD Authors: Nakamura, T., Uegaki, K. Description: Peroxiredoxin from Pyrococcus horikoshii (sulfonic acid form) [[Category: Unreleased...)
Current revision (08:53, 9 April 2025) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5xbr is ON HOLD
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==Peroxiredoxin from Pyrococcus horikoshii (sulfonic acid form)==
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<StructureSection load='5xbr' size='340' side='right'caption='[[5xbr]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5xbr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XBR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XBR FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xbr OCA], [https://pdbe.org/5xbr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xbr RCSB], [https://www.ebi.ac.uk/pdbsum/5xbr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xbr ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TDXH_PYRHO TDXH_PYRHO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Peroxiredoxin from Pyrococcus horikoshii (PhPrx) is a decameric protein formed by ring-type assembly of five dimers. To engineer the quaternary structure of PhPrx, we created a mutant PhPrx (PhPrx6m) by introducing six point mutations designed to dissociate PhPrx into dimers. Although PhPrx6m was a dimer in solution, the six dimers assembled into a dodecamer following crystallization. In the crystal structure, PhPrx6m was overoxidized, and the peroxidatic cysteine was in sulfonic acid form and two cysteines in the C-terminal region were linked by an intramolecular disulfide bond. Thus, we characterized the wild-type PhPrx overoxidized by hydrogen peroxide (PhPrxPer). Analytical ultracentrifugation showed that PhPrxPer had a higher molecular mass in solution than PhPrx. This was confirmed by analysis of the crystal structure of PhPrxPer, which was found to form a ring-type dodecamer composed of six dimers. The monomeric structures of PhPrx6m and PhPrxPer differed from that of PhPrx in the relative orientation of two domains, reflecting the number of dimers in the ring-type assembly. Unlike PhPrx, homologous peroxiredoxin from Aeropyrum pernix (ApPrx) did not undergo hexameric association. This property can be explained by the stronger connection between the two domains in ApPrx due to its C-terminal extension relative to PhPrx.
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Authors: Nakamura, T., Uegaki, K.
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Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea.,Nakamura T, Oshima M, Yasuda M, Shimamura A, Morita J, Uegaki K J Biochem. 2017 Dec 1;162(6):415-422. doi: 10.1093/jb/mvx045. PMID:28992240<ref>PMID:28992240</ref>
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Description: Peroxiredoxin from Pyrococcus horikoshii (sulfonic acid form)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Uegaki, K]]
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<div class="pdbe-citations 5xbr" style="background-color:#fffaf0;"></div>
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[[Category: Nakamura, T]]
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==See Also==
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*[[Peroxiredoxin 3D structures|Peroxiredoxin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pyrococcus horikoshii OT3]]
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[[Category: Nakamura T]]
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[[Category: Uegaki K]]

Current revision

Peroxiredoxin from Pyrococcus horikoshii (sulfonic acid form)

PDB ID 5xbr

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