This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5vb2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: ==Crystal structure of the NavAb voltage-gated sodium channel in a closed conformation== <StructureSection load='5vb2' size='340' side='right' caption='5vb2, resolution...)
Current revision (13:45, 4 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of the NavAb voltage-gated sodium channel in a closed conformation==
==Crystal structure of the NavAb voltage-gated sodium channel in a closed conformation==
-
<StructureSection load='5vb2' size='340' side='right' caption='[[5vb2]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+
<StructureSection load='5vb2' size='340' side='right'caption='[[5vb2]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5vb2]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VB2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VB2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5vb2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aliarcobacter_butzleri Aliarcobacter butzleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VB2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VB2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vb8|5vb8]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vb2 OCA], [http://pdbe.org/5vb2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vb2 RCSB], [http://www.ebi.ac.uk/pdbsum/5vb2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vb2 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vb2 OCA], [https://pdbe.org/5vb2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vb2 RCSB], [https://www.ebi.ac.uk/pdbsum/5vb2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vb2 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A8EVM5_ALIB4 A8EVM5_ALIB4]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 19:
</div>
</div>
<div class="pdbe-citations 5vb2" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5vb2" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ion channels 3D structures|Ion channels 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Catterall, W A]]
+
[[Category: Aliarcobacter butzleri]]
-
[[Category: Lenaeus, M J]]
+
[[Category: Large Structures]]
-
[[Category: Transport protein]]
+
[[Category: Catterall WA]]
-
[[Category: Voltage-gated sodium channel]]
+
[[Category: Lenaeus MJ]]

Current revision

Crystal structure of the NavAb voltage-gated sodium channel in a closed conformation

PDB ID 5vb2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools