This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1uil

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:54, 27 December 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1uil.jpg|left|200px]]
 
-
{{Structure
+
==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==
-
|PDB= 1uil |SIZE=350|CAPTION= <scene name='initialview01'>1uil</scene>
+
<StructureSection load='1uil' size='340' side='right'caption='[[1uil]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [https://pdbe.org/1uil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [https://www.ebi.ac.uk/pdbsum/1uil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [https://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB]</span>
+
[https://www.uniprot.org/uniprot/DHX9_MOUSE DHX9_MOUSE] Component of the CRD-mediated complex that promotes MYC mRNA stability. Unwinds double-stranded DNA and RNA in a 3' to 5' direction. Alterations of secondary structure may subsequently influence interactions with proteins or other nucleic acids. Functions as a transcriptional activator. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity).
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Double-stranded RNA-binding motif of Hypothetical protein BAB28848'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ui/1uil_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1UIL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uil ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Single protein]]
+
[[Category: Aoki M]]
-
[[Category: Aoki, M.]]
+
[[Category: Hamana H]]
-
[[Category: Hamana, H.]]
+
[[Category: Hayashi F]]
-
[[Category: Hayashi, F.]]
+
[[Category: Hayashizaki Y]]
-
[[Category: Hayashizaki, Y.]]
+
[[Category: Hirota H]]
-
[[Category: Hirota, H.]]
+
[[Category: Inoue M]]
-
[[Category: Inoue, M.]]
+
[[Category: Kigawa T]]
-
[[Category: Kigawa, T.]]
+
[[Category: Kobayashi N]]
-
[[Category: Kobayashi, N.]]
+
[[Category: Matsuda T]]
-
[[Category: Matsuda, T.]]
+
[[Category: Matsuo Y]]
-
[[Category: Matsuo, Y.]]
+
[[Category: Muto Y]]
-
[[Category: Muto, Y.]]
+
[[Category: Nagata T]]
-
[[Category: Nagata, T.]]
+
[[Category: Osanai T]]
-
[[Category: Osanai, T.]]
+
[[Category: Seki E]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Shirouzu M]]
-
[[Category: Seki, E.]]
+
[[Category: Tanaka A]]
-
[[Category: Shirouzu, M.]]
+
[[Category: Terada T]]
-
[[Category: Tanaka, A.]]
+
[[Category: Yabuki T]]
-
[[Category: Terada, T.]]
+
[[Category: Yokoyama S]]
-
[[Category: Yabuki, T.]]
+
[[Category: Yoshida M]]
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Yoshida, M.]]
+
-
[[Category: double-stranded rna-binding motif]]
+
-
[[Category: dsrm]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:10:50 2008''
+

Current revision

Double-stranded RNA-binding motif of Hypothetical protein BAB28848

PDB ID 1uil

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1uil"
Personal tools