This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1uly
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1uly.jpg|left|200px]] | ||
| - | + | ==Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3== | |
| - | + | <StructureSection load='1uly' size='340' side='right'caption='[[1uly]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1uly]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ULY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ULY FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uly OCA], [https://pdbe.org/1uly PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uly RCSB], [https://www.ebi.ac.uk/pdbsum/1uly PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uly ProSAT]</span></td></tr> | |
| - | | | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/O59595_PYRHO O59595_PYRHO] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | == | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ul/1uly_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Itou | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uly ConSurf]. |
| - | [[Category: Tanaka | + | <div style="clear:both"></div> |
| - | [[Category: Watanabe | + | __TOC__ |
| - | [[Category: Yao | + | </StructureSection> |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Pyrococcus horikoshii OT3]] | |
| - | + | [[Category: Itou H]] | |
| - | + | [[Category: Tanaka I]] | |
| + | [[Category: Watanabe N]] | ||
| + | [[Category: Yao M]] | ||
Current revision
Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3
| |||||||||||
