This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5m4d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:25, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Alpha-amino epsilon-caprolactam racemase K241A mutant in complex with D-ACL (external aldimine)==
==Alpha-amino epsilon-caprolactam racemase K241A mutant in complex with D-ACL (external aldimine)==
-
<StructureSection load='5m4d' size='340' side='right' caption='[[5m4d]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
+
<StructureSection load='5m4d' size='340' side='right'caption='[[5m4d]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m4d]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M4D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M4D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m4d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizobium_freirei_PRF_81 Rhizobium freirei PRF 81]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M4D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M4D FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7F7:[6-METHYL-5-OXIDANYL-4-[(~{E})-[(3~{R})-2-OXIDANYLIDENEAZEPAN-3-YL]IMINOMETHYL]PYRIDIN-3-YL]METHYL+DIHYDROGEN+PHOSPHATE'>7F7</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5m46|5m46]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7F7:[6-METHYL-5-OXIDANYL-4-[(~{E})-[(3~{R})-2-OXIDANYLIDENEAZEPAN-3-YL]IMINOMETHYL]PYRIDIN-3-YL]METHYL+DIHYDROGEN+PHOSPHATE'>7F7</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m4d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m4d OCA], [http://pdbe.org/5m4d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m4d RCSB], [http://www.ebi.ac.uk/pdbsum/5m4d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m4d ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m4d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m4d OCA], [https://pdbe.org/5m4d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m4d RCSB], [https://www.ebi.ac.uk/pdbsum/5m4d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m4d ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/N6UXY4_9HYPH N6UXY4_9HYPH]
 +
 +
==See Also==
 +
*[[Aminotransferase 3D structures|Aminotransferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Frese, A]]
+
[[Category: Large Structures]]
-
[[Category: Grogan, G]]
+
[[Category: Rhizobium freirei PRF 81]]
-
[[Category: Sutton, P W]]
+
[[Category: Frese A]]
-
[[Category: Turkenburg, J P]]
+
[[Category: Grogan G]]
-
[[Category: Isomerase]]
+
[[Category: Sutton PW]]
-
[[Category: Plp]]
+
[[Category: Turkenburg JP]]
-
[[Category: Racemase]]
+

Current revision

Alpha-amino epsilon-caprolactam racemase K241A mutant in complex with D-ACL (external aldimine)

PDB ID 5m4d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools