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| ==Structure of L-lysine oxidase== | | ==Structure of L-lysine oxidase== |
- | <StructureSection load='3x0v' size='340' side='right' caption='[[3x0v]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='3x0v' size='340' side='right'caption='[[3x0v]], [[Resolution|resolution]] 1.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3x0v]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_viride Trichoderma viride]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3X0V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3x0v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_viride Trichoderma viride]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3X0V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3X0V FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/L-lysine_oxidase L-lysine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.14 1.4.3.14] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3x0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0v OCA], [http://pdbe.org/3x0v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3x0v RCSB], [http://www.ebi.ac.uk/pdbsum/3x0v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0v ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3x0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3x0v OCA], [https://pdbe.org/3x0v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3x0v RCSB], [https://www.ebi.ac.uk/pdbsum/3x0v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3x0v ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A0J9X1X3_HYPRU A0A0J9X1X3_HYPRU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: L-lysine oxidase]] | + | [[Category: Large Structures]] |
| [[Category: Trichoderma viride]] | | [[Category: Trichoderma viride]] |
- | [[Category: Amano, M]] | + | [[Category: Amano M]] |
- | [[Category: Imada, K]] | + | [[Category: Imada K]] |
- | [[Category: Inagaki, K]] | + | [[Category: Inagaki K]] |
- | [[Category: Kawaguchi, T]] | + | [[Category: Kawaguchi T]] |
- | [[Category: Kondo, H]] | + | [[Category: Kondo H]] |
- | [[Category: Sano, T]] | + | [[Category: Sano T]] |
- | [[Category: Uchida, Y]] | + | [[Category: Uchida Y]] |
- | [[Category: Oxidative deamination]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: Secreted protein]]
| + | |
| Structural highlights
Function
A0A0J9X1X3_HYPRU
Publication Abstract from PubMed
L-Lysine alpha-oxidase (LysOX) from Trichoderma viride is a homodimeric 112 kDa flavoenzyme that catalyzes the oxidative deamination of L-lysine to form alpha-keto-epsilon-aminocaproate. LysOX severely inhibited growth of cancer cells but showed relatively low cytotoxicity for normal cells. We have determined the cDNA nucleotide sequence encoding LysOX from T. viride. The full-length cDNA consists of 2,119 bp and encodes a possible signal peptide (Met1-Arg77) and the mature protein (Ala78-Ile617). The LysOX gene have been cloned and heterologously expressed in Streptomyces lividans TK24 with the enzyme activity up to 9.8 U/ml. The enzymatic properties of the purified recombinant LysOX, such as substrate specificity and thermal stability, are same as those of native LysOX. The crystal structure of LysOX at 1.9 A resolution revealed that the overall structure is similar to that of snake venom L-amino acid oxidase (LAAO), and the residues involved in the interaction with the amino or carboxy group of the substrate are structurally conserved. However, the entrance and the inner surface structures of the funnel to the active site, as well as the residues involved in the substrate side-chain recognition, are distinct from LAAOs. These structural differences well explain the unique substrate specificity of LysOX.
Recombinant expression, molecular characterization and crystal structure of antitumor enzyme, l-lysine alpha-oxidase from Trichoderma viride.,Amano M, Mizuguchi H, Sano T, Kondo H, Shinyashiki K, Inagaki J, Tamura T, Kawaguchi T, Kusakabe H, Imada K, Inagaki K J Biochem. 2015 Feb 3. pii: mvv012. PMID:25648943[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Amano M, Mizuguchi H, Sano T, Kondo H, Shinyashiki K, Inagaki J, Tamura T, Kawaguchi T, Kusakabe H, Imada K, Inagaki K. Recombinant expression, molecular characterization and crystal structure of antitumor enzyme, l-lysine alpha-oxidase from Trichoderma viride. J Biochem. 2015 Feb 3. pii: mvv012. PMID:25648943 doi:http://dx.doi.org/10.1093/jb/mvv012
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