1ur3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:39, 23 October 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ur3.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of the apo form of the E.coli ydhF protein==
-
|PDB= 1ur3 |SIZE=350|CAPTION= <scene name='initialview01'>1ur3</scene>, resolution 2.57&Aring;
+
<StructureSection load='1ur3' size='340' side='right'caption='[[1ur3]], [[Resolution|resolution]] 2.57&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Chain+M'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[1ur3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UR3 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.57&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ur3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ur3 OCA], [https://pdbe.org/1ur3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ur3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ur3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ur3 ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ur3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ur3 OCA], [http://www.ebi.ac.uk/pdbsum/1ur3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ur3 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/YDHF_ECOLI YDHF_ECOLI] May function as oxidoreductase (Potential).
-
 
+
== Evolutionary Conservation ==
-
'''CRYSTAL STRUCTURE OF THE APO FORM OF THE E.COLI YDHF PROTEIN'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ur/1ur3_consurf.spt"</scriptWhenChecked>
-
1UR3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UR3 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Escherichia coli]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Abergel, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ur3 ConSurf].
-
[[Category: Claverie, J M.]]
+
<div style="clear:both"></div>
-
[[Category: Jeudy, S.]]
+
__TOC__
-
[[Category: aldo-keto reductase]]
+
</StructureSection>
-
[[Category: nadp binding]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: oxidoreductase]]
+
[[Category: Large Structures]]
-
 
+
[[Category: Abergel C]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:13:58 2008''
+
[[Category: Claverie JM]]
 +
[[Category: Jeudy S]]

Current revision

Crystal structure of the apo form of the E.coli ydhF protein

PDB ID 1ur3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools