1h6l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:18, 13 December 2023) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1h6l.gif|left|200px]]<br />
 
-
<applet load="1h6l" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1h6l, resolution 1.8&Aring;" />
 
-
'''BETA-PROPELLER PHYTASE IN COMPLEX WITH PHOSPHATE AND CALCIUM IONS'''<br />
 
-
==Overview==
+
==beta-propeller phytase in complex with phosphate and calcium ions==
-
BACKGROUND: Phytases hydrolyze phytic acid (myo-inositol-hexakisphosphate), to less-phosphorylated myo-inositol derivatives and inorganic phosphate., Phytases are used in animal feed to reduce phosphate pollution in the, environment. Recently, a thermostable, calcium-dependent Bacillus phytase, was identified that represents the first example of the beta propeller, fold exhibiting phosphatase activity. We sought to delineate the catalytic, mechanism and property of this enzyme. RESULTS: The crystal structure of, the enzyme in complex with inorganic phosphate reveals that two phosphates, and four calcium ions are tightly bound at the active site. Mutation of, the residues involved in the calcium chelation results in severe defects, in the enzyme's activity. One phosphate ion, chelating all of the four, calcium ions, is close to a water molecule bridging two of the bound, calcium ions. Fluoride ion, which is expected to replace this water, molecule, is an uncompetitive inhibitor of the enzyme. The enzyme is able, to hydrolyze any of the six phosphate groups of phytate. CONCLUSIONS: The, enzyme reaction is likely to proceed through a direct attack of the, metal-bridging water molecule on the phosphorous atom of a substrate and, the subsequent stabilization of the pentavalent transition state by the, bound calcium ions. The enzyme has two phosphate binding sites, the, "cleavage site", which is responsible for the hydrolysis of a substrate, and the "affinity site", which increases the binding affinity for, substrates containing adjacent phosphate groups. The existence of the two, nonequivalent phosphate binding sites explains the puzzling formation of, the alternately dephosphorylated myo-inositol triphosphates from phytate, and the hydrolysis of myo-inositol monophosphates.
+
<StructureSection load='1h6l' size='340' side='right'caption='[[1h6l]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1h6l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H6L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1H6L FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1h6l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h6l OCA], [https://pdbe.org/1h6l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1h6l RCSB], [https://www.ebi.ac.uk/pdbsum/1h6l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1h6l ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PHYT_BACSD PHYT_BACSD]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h6/1h6l_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1h6l ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
BACKGROUND: Phytases hydrolyze phytic acid (myo-inositol-hexakisphosphate) to less-phosphorylated myo-inositol derivatives and inorganic phosphate. Phytases are used in animal feed to reduce phosphate pollution in the environment. Recently, a thermostable, calcium-dependent Bacillus phytase was identified that represents the first example of the beta propeller fold exhibiting phosphatase activity. We sought to delineate the catalytic mechanism and property of this enzyme. RESULTS: The crystal structure of the enzyme in complex with inorganic phosphate reveals that two phosphates and four calcium ions are tightly bound at the active site. Mutation of the residues involved in the calcium chelation results in severe defects in the enzyme's activity. One phosphate ion, chelating all of the four calcium ions, is close to a water molecule bridging two of the bound calcium ions. Fluoride ion, which is expected to replace this water molecule, is an uncompetitive inhibitor of the enzyme. The enzyme is able to hydrolyze any of the six phosphate groups of phytate. CONCLUSIONS: The enzyme reaction is likely to proceed through a direct attack of the metal-bridging water molecule on the phosphorous atom of a substrate and the subsequent stabilization of the pentavalent transition state by the bound calcium ions. The enzyme has two phosphate binding sites, the "cleavage site", which is responsible for the hydrolysis of a substrate, and the "affinity site", which increases the binding affinity for substrates containing adjacent phosphate groups. The existence of the two nonequivalent phosphate binding sites explains the puzzling formation of the alternately dephosphorylated myo-inositol triphosphates from phytate and the hydrolysis of myo-inositol monophosphates.
-
==About this Structure==
+
Enzyme mechanism and catalytic property of beta propeller phytase.,Shin S, Ha NC, Oh BC, Oh TK, Oh BH Structure. 2001 Sep;9(9):851-8. PMID:11566134<ref>PMID:11566134</ref>
-
1H6L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens] with CA and PO4 as [http://en.wikipedia.org/wiki/ligands ligands]. Structure known Active Sites: AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8 and AC9. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1H6L OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Enzyme mechanism and catalytic property of beta propeller phytase., Shin S, Ha NC, Oh BC, Oh TK, Oh BH, Structure. 2001 Sep;9(9):851-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11566134 11566134]
+
</div>
-
[[Category: Bacillus amyloliquefaciens]]
+
<div class="pdbe-citations 1h6l" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
-
[[Category: Ha, N.C.]]
+
-
[[Category: Oh, B.H.]]
+
-
[[Category: Shin, S.]]
+
-
[[Category: CA]]
+
-
[[Category: PO4]]
+
-
[[Category: phosphatase]]
+
-
[[Category: phosphate]]
+
-
[[Category: phytase]]
+
-
[[Category: propeller]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 5 16:30:42 2007''
+
==See Also==
 +
*[[Phytase 3D structures|Phytase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacillus amyloliquefaciens]]
 +
[[Category: Large Structures]]
 +
[[Category: Ha NC]]
 +
[[Category: Oh BH]]
 +
[[Category: Shin S]]

Current revision

beta-propeller phytase in complex with phosphate and calcium ions

PDB ID 1h6l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools