This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gr9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:11, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of ColD H188K S187N==
==Crystal structure of ColD H188K S187N==
-
<StructureSection load='3gr9' size='340' side='right' caption='[[3gr9]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='3gr9' size='340' side='right'caption='[[3gr9]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gr9]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GR9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GR9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gr9]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GR9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GR9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gr9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gr9 OCA], [http://pdbe.org/3gr9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gr9 RCSB], [http://www.ebi.ac.uk/pdbsum/3gr9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gr9 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gr9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gr9 OCA], [https://pdbe.org/3gr9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gr9 RCSB], [https://www.ebi.ac.uk/pdbsum/3gr9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gr9 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B1B4V9_ECOLX B1B4V9_ECOLX]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/3gr9_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/3gr9_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cook, P D]]
+
[[Category: Escherichia coli]]
-
[[Category: Holden, H M]]
+
[[Category: Large Structures]]
-
[[Category: Kubiak, R L]]
+
[[Category: Cook PD]]
-
[[Category: Toomey, D P]]
+
[[Category: Holden HM]]
-
[[Category: Aminotransferase]]
+
[[Category: Kubiak RL]]
-
[[Category: Colitose]]
+
[[Category: Toomey DP]]
-
[[Category: Lipopolysaccharide]]
+
-
[[Category: O-antigen]]
+
-
[[Category: Perosamine]]
+
-
[[Category: Plp]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of ColD H188K S187N

PDB ID 3gr9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools