5vks

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 5vks is ON HOLD Authors: Xu, S., Liu, Y., Woodruff, A., Zhong, W., Jiang, X., Kennedy, M.A. Description: Crystal structure of P[19] rotavirus VP8* ...)
Current revision (13:50, 4 October 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5vks is ON HOLD
+
==Crystal structure of P[19] rotavirus VP8* complexed with LNFPI==
 +
<StructureSection load='5vks' size='340' side='right'caption='[[5vks]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5vks]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_rotavirus_A Human rotavirus A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VKS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VKS FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vks FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vks OCA], [https://pdbe.org/5vks PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vks RCSB], [https://www.ebi.ac.uk/pdbsum/5vks PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vks ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A7YCM0_9VIRU A7YCM0_9VIRU]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Recognition of specific cell surface glycans, mediated by the VP8* domain of the spike protein VP4, is the essential first step in rotavirus (RV) infection. Due to lack of direct structural information of virus-ligand interactions, the molecular basis of ligand-controlled host ranges of the major human RVs (P[8] and P[4]) in P[II] genogroup remains unknown. Here, through characterization of a minor P[II] RV (P[19]) that can infect both animals (pigs) and humans, we made an important advance to fill this knowledge gap by solving the crystal structures of the P[19] VP8* in complex with its ligands. Our data showed that P[19] RVs use a novel binding site that differs from the known ones of other genotypes/genogroups. This binding site is capable of interacting with two types of glycans, the mucin core and type 1 histo-blood group antigens (HBGAs) with a common GlcNAc as the central binding saccharide. The binding site is apparently shared by other P[II] RVs and possibly two genotypes (P[10] and P[12]) in P[I] as shown by their highly conserved GlcNAc-interacting residues. These data provide strong evidence of evolutionary connections among these human and animal RVs, pointing to a common ancestor in P[I] with a possible animal host origin. While the binding properties to GlcNAc-containing saccharides are maintained, changes in binding to additional residues, such as those in the polymorphic type 1 HBGAs may occur in the course of RV evolution, explaining the complex P[II] genogroup that mainly causes diseases in humans but also in some animals.
-
Authors: Xu, S., Liu, Y., Woodruff, A., Zhong, W., Jiang, X., Kennedy, M.A.
+
Structural basis of glycan specificity of P[19] VP8*: Implications for rotavirus zoonosis and evolution.,Liu Y, Xu S, Woodruff AL, Xia M, Tan M, Kennedy MA, Jiang X PLoS Pathog. 2017 Nov 14;13(11):e1006707. doi: 10.1371/journal.ppat.1006707., eCollection 2017 Nov. PMID:29136651<ref>PMID:29136651</ref>
-
Description: Crystal structure of P[19] rotavirus VP8* complexed with LNFPI
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Xu, S]]
+
<div class="pdbe-citations 5vks" style="background-color:#fffaf0;"></div>
-
[[Category: Kennedy, M.A]]
+
 
-
[[Category: Liu, Y]]
+
==See Also==
-
[[Category: Zhong, W]]
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
[[Category: Jiang, X]]
+
== References ==
-
[[Category: Woodruff, A]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Human rotavirus A]]
 +
[[Category: Large Structures]]
 +
[[Category: Jiang X]]
 +
[[Category: Kennedy MA]]
 +
[[Category: Liu Y]]
 +
[[Category: Woodruff A]]
 +
[[Category: Xu S]]
 +
[[Category: Zhong W]]

Current revision

Crystal structure of P[19] rotavirus VP8* complexed with LNFPI

PDB ID 5vks

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools