This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.




5cm6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:32, 15 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOALTEROMONAS ATLANTICA T6c(Patl_2292, TARGET EFI-510180) WITH BOUND SODIUM AND PYRUVATE==
==CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOALTEROMONAS ATLANTICA T6c(Patl_2292, TARGET EFI-510180) WITH BOUND SODIUM AND PYRUVATE==
-
<StructureSection load='5cm6' size='340' side='right' caption='[[5cm6]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
+
<StructureSection load='5cm6' size='340' side='right'caption='[[5cm6]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5cm6]] is a 2 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4x26 4x26]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CM6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CM6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5cm6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_atlantica_T6c Pseudoalteromonas atlantica T6c]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4x26 4x26]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CM6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cm6 OCA], [http://pdbe.org/5cm6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cm6 RCSB], [http://www.ebi.ac.uk/pdbsum/5cm6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cm6 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cm6 OCA], [https://pdbe.org/5cm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cm6 RCSB], [https://www.ebi.ac.uk/pdbsum/5cm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cm6 ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
+
 
-
[[http://www.uniprot.org/uniprot/Q15TH9_PSEA6 Q15TH9_PSEA6]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system.[PIRNR:PIRNR039026]
+
==See Also==
 +
*[[TRAP dicarboxylate transporter%2C DctP subunit|TRAP dicarboxylate transporter%2C DctP subunit]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Attonito, J D]]
+
[[Category: Pseudoalteromonas atlantica T6c]]
-
[[Category: Benach, J]]
+
[[Category: Al Obaidi NF]]
-
[[Category: Chamala, S]]
+
[[Category: Almo SC]]
-
[[Category: Chowdhury, S]]
+
[[Category: Attonito JD]]
-
[[Category: EFI, Enzyme Function Initiative]]
+
[[Category: Benach J]]
-
[[Category: Gerlt, J A]]
+
[[Category: Chamala S]]
-
[[Category: Glenn, A Scott]]
+
[[Category: Chowdhury S]]
-
[[Category: Lafleur, J]]
+
[[Category: Gerlt JA]]
-
[[Category: Love, J]]
+
[[Category: Lafleur J]]
-
[[Category: Morisco, L L]]
+
[[Category: Love J]]
-
[[Category: Obaidi, N F.Al]]
+
[[Category: Morisco LL]]
-
[[Category: Seidel, R D]]
+
[[Category: Scott Glenn A]]
-
[[Category: Toro, R]]
+
[[Category: Seidel RD]]
-
[[Category: Vetting, M W]]
+
[[Category: Toro R]]
-
[[Category: Wasserman, S R]]
+
[[Category: Vetting MW]]
-
[[Category: Whalen, K L]]
+
[[Category: Wasserman SR]]
-
[[Category: Yadava, U]]
+
[[Category: Whalen KL]]
-
[[Category: Efi]]
+
[[Category: Yadava U]]
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Solute binding protein]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transport protein]]
+

Current revision

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOALTEROMONAS ATLANTICA T6c(Patl_2292, TARGET EFI-510180) WITH BOUND SODIUM AND PYRUVATE

PDB ID 5cm6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5cm6"
Personal tools