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5akf

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==THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN==
==THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN==
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<StructureSection load='5akf' size='340' side='right' caption='[[5akf]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
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<StructureSection load='5akf' size='340' side='right'caption='[[5akf]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5akf]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AKF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AKF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5akf]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfurococcus_mucosus Desulfurococcus mucosus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AKF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AKF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ak9|5ak9]], [[5akm|5akm]], [[5akn|5akn]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5akf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5akf OCA], [http://pdbe.org/5akf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5akf RCSB], [http://www.ebi.ac.uk/pdbsum/5akf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5akf ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5akf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5akf OCA], [https://pdbe.org/5akf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5akf RCSB], [https://www.ebi.ac.uk/pdbsum/5akf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5akf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DMO1_DESMO DMO1_DESMO]] Endonuclease involved in intron homing. Recognizes a recognizes up to 20 bp of DNA in the 23S rRNA gene intron. It has a slow turnover rate and cuts the coding strand with a slight preference over the non-coding strand.
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[https://www.uniprot.org/uniprot/DMO1_DESMO DMO1_DESMO] Endonuclease involved in intron homing. Recognizes a recognizes up to 20 bp of DNA in the 23S rRNA gene intron. It has a slow turnover rate and cuts the coding strand with a slight preference over the non-coding strand.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Endonuclease|Endonuclease]]
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*[[Endonuclease 3D structures|Endonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Abramo, M D]]
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[[Category: Desulfurococcus mucosus]]
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[[Category: Marcaida, M J]]
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[[Category: Large Structures]]
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[[Category: Marenchino, M]]
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[[Category: Synthetic construct]]
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[[Category: Molina, R]]
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[[Category: D'Abramo M]]
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[[Category: Montoya, G]]
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[[Category: Marcaida MJ]]
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[[Category: Prieto, J]]
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[[Category: Marenchino M]]
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[[Category: Redondo, P]]
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[[Category: Molina R]]
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[[Category: Gene targeting]]
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[[Category: Montoya G]]
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[[Category: Genetic]]
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[[Category: Prieto J]]
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[[Category: Homing endonuclease]]
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[[Category: Redondo P]]
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[[Category: Hydrolase]]
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[[Category: Protein-dna interaction]]
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Current revision

THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN

PDB ID 5akf

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