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5nyz

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(New page: '''Unreleased structure''' The entry 5nyz is ON HOLD Authors: Alite, C., Humphrey, S., Donderis, J., Maiques, E., Ciges-Tomas, J.R., Penades, J.R., Marina, A. Description: Twist and in...)
Current revision (12:16, 22 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5nyz is ON HOLD
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==Twist and induce: Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. D95E mutant from dUTPase 80alpha phage.==
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<StructureSection load='5nyz' size='340' side='right'caption='[[5nyz]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5nyz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_virus_80alpha Staphylococcus virus 80alpha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NYZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUP:2-DEOXYURIDINE+5-ALPHA,BETA-IMIDO-TRIPHOSPHATE'>DUP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nyz OCA], [https://pdbe.org/5nyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nyz RCSB], [https://www.ebi.ac.uk/pdbsum/5nyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nyz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A4ZF98_9CAUD A4ZF98_9CAUD]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The trimeric staphylococcal phage-encoded dUTPases (Duts) are signalling molecules that induce the cycle of some Staphylococcal pathogenicity islands (SaPIs) by binding to the SaPI-encoded Stl repressor. To perform this regulatory role, these Duts require an extra motif VI, as well as the Dut conserved motifs IV and V. While the apo form of Dut is required for the interaction with the Stl repressor, usually only those Duts with normal enzymatic activity can induce the SaPI cycle. To understand the link between the enzymatic activities and inducing capacities of the Dut protein, we analysed the structural, biochemical and physiological characteristics of the Dut80alpha D95E mutant, which loses the SaPI cycle induction capacity despite retaining enzymatic activity. Asp95 is located at the threefold central channel of the trimeric Dut where it chelates a divalent ion. Here, using state-of-the-art techniques, we demonstrate that D95E mutation has an epistatic effect on the motifs involved in Stl binding. Thus, ion binding in the central channel correlates with the capacity of motif V to twist and order in the SaPI-inducing disposition, while the tip of motif VI is disturbed. These alterations in turn reduce the affinity for the Stl repressor and the capacity to induce the SaPI cycle.
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Authors: Alite, C., Humphrey, S., Donderis, J., Maiques, E., Ciges-Tomas, J.R., Penades, J.R., Marina, A.
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Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80alpha dUTPase.,Alite C, Humphrey S, Donderis J, Maiques E, Ciges-Tomas JR, Penades JR, Marina A Sci Rep. 2017 Sep 11;7(1):11234. doi: 10.1038/s41598-017-11234-9. PMID:28894239<ref>PMID:28894239</ref>
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Description: Twist and induce: Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. D95E mutant from dUTPase 80alpha phage.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Penades, J.R]]
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<div class="pdbe-citations 5nyz" style="background-color:#fffaf0;"></div>
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[[Category: Ciges-Tomas, J.R]]
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[[Category: Humphrey, S]]
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==See Also==
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[[Category: Maiques, E]]
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*[[DUTPase 3D structures|DUTPase 3D structures]]
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[[Category: Alite, C]]
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== References ==
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[[Category: Donderis, J]]
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<references/>
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[[Category: Marina, A]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Staphylococcus virus 80alpha]]
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[[Category: Alite C]]
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[[Category: Ciges-Tomas JR]]
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[[Category: Donderis J]]
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[[Category: Humphrey S]]
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[[Category: Maiques E]]
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[[Category: Marina A]]
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[[Category: Penades JR]]

Current revision

Twist and induce: Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. D95E mutant from dUTPase 80alpha phage.

PDB ID 5nyz

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