1vc3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:36, 21 November 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vc3.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of L-Aspartate-alpha-Decarboxylase==
-
|PDB= 1vc3 |SIZE=350|CAPTION= <scene name='initialview01'>1vc3</scene>, resolution 1.50&Aring;
+
<StructureSection load='1vc3' size='340' side='right'caption='[[1vc3]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene>
+
<table><tr><td colspan='2'>[[1vc3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VC3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VC3 FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyruvate_decarboxylase Pyruvate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.1 4.1.1.1] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= HB8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vc3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vc3 OCA], [https://pdbe.org/1vc3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vc3 RCSB], [https://www.ebi.ac.uk/pdbsum/1vc3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vc3 ProSAT], [https://www.topsan.org/Proteins/RSGI/1vc3 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vc3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vc3 OCA], [http://www.ebi.ac.uk/pdbsum/1vc3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vc3 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/PAND_THET8 PAND_THET8] Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vc/1vc3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vc3 ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of L-Aspartate-alpha-Decarboxylase'''
+
==See Also==
-
 
+
*[[Aspartate decarboxylase 3D structures|Aspartate decarboxylase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1VC3 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VC3 OCA].
+
[[Category: Large Structures]]
-
[[Category: Protein complex]]
+
-
[[Category: Pyruvate decarboxylase]]
+
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Nakajima, O.]]
+
[[Category: Nakajima O]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: pyruvoyl group]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: tetramer]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:22:18 2008''
+

Current revision

Crystal Structure of L-Aspartate-alpha-Decarboxylase

PDB ID 1vc3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1vc3"
Personal tools