1vd6

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[[Image:1vd6.gif|left|200px]]
 
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{{Structure
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==Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol==
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|PDB= 1vd6 |SIZE=350|CAPTION= <scene name='initialview01'>1vd6</scene>, resolution 1.30&Aring;
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<StructureSection load='1vd6' size='340' side='right'caption='[[1vd6]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
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<table><tr><td colspan='2'>[[1vd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD6 FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd6 OCA], [https://pdbe.org/1vd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd6 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd6 ProSAT], [https://www.topsan.org/Proteins/RSGI/1vd6 TOPSAN]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd6 OCA], [http://www.ebi.ac.uk/pdbsum/1vd6 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vd6 RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/Q53W25_THET8 Q53W25_THET8]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd6 ConSurf].
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<div style="clear:both"></div>
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'''Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol'''
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==See Also==
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*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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1VD6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD6 OCA].
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[[Category: Large Structures]]
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[[Category: Glycerophosphodiester phosphodiesterase]]
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[[Category: Thermus thermophilus HB8]]
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[[Category: Single protein]]
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[[Category: Ishijima J]]
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[[Category: Thermus thermophilus]]
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[[Category: Yutani K]]
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[[Category: Ishijima, J.]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Yutani, K.]]
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[[Category: glycerol complex]]
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[[Category: glycerophosphodiester phosphodiesterase]]
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[[Category: glycerophosphoryl diester phosphodiesterase]]
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[[Category: hb8]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: structural genomic]]
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[[Category: thermus thermophilus]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:22:45 2008''
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Current revision

Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol

PDB ID 1vd6

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