This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ii7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:53, 30 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==In-house sulfur-SAD structure of orthorhombic red abalone lysin at 1.66 A resolution==
==In-house sulfur-SAD structure of orthorhombic red abalone lysin at 1.66 A resolution==
-
<StructureSection load='5ii7' size='340' side='right' caption='[[5ii7]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
+
<StructureSection load='5ii7' size='340' side='right'caption='[[5ii7]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ii7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5II7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5II7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ii7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haliotis_rufescens Haliotis rufescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5II7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5II7 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lis|1lis]], [[2lis|2lis]], [[1lyn|1lyn]], [[2lyn|2lyn]], [[5ii8|5ii8]], [[5ii9|5ii9]], [[5iia|5iia]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ii7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ii7 OCA], [http://pdbe.org/5ii7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ii7 RCSB], [http://www.ebi.ac.uk/pdbsum/5ii7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ii7 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ii7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ii7 OCA], [https://pdbe.org/5ii7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ii7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ii7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ii7 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU]] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
+
[https://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 21:
==See Also==
==See Also==
-
*[[Lysin|Lysin]]
+
*[[Lysin 3D structures|Lysin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Al-Hosseini, H Sadat]]
+
[[Category: Haliotis rufescens]]
-
[[Category: Jovine, L]]
+
[[Category: Large Structures]]
-
[[Category: Nishimura, K]]
+
[[Category: Jovine L]]
-
[[Category: Raj, I]]
+
[[Category: Nishimura K]]
-
[[Category: Acrosomal protein]]
+
[[Category: Raj I]]
-
[[Category: Cell adhesion]]
+
[[Category: Sadat Al-Hosseini H]]
-
[[Category: Crystal dehydration]]
+
-
[[Category: Egg coat penetration]]
+
-
[[Category: Egg-binding protein]]
+
-
[[Category: Egg-sperm interaction]]
+
-
[[Category: Fertilization]]
+
-
[[Category: Gamete recognition]]
+
-
[[Category: S-sad]]
+
-
[[Category: Sulfur-sad]]
+

Current revision

In-house sulfur-SAD structure of orthorhombic red abalone lysin at 1.66 A resolution

PDB ID 5ii7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools