5cpx

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==Crystal structure of murine polyomavirus PTA strain VP1 in complex with the DSLNT glycan==
==Crystal structure of murine polyomavirus PTA strain VP1 in complex with the DSLNT glycan==
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<StructureSection load='5cpx' size='340' side='right' caption='[[5cpx]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
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<StructureSection load='5cpx' size='340' side='right'caption='[[5cpx]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5cpx]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CPX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CPX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5cpx]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus_polyomavirus_1 Mus musculus polyomavirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CPX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1vps|1vps]], [[1vpn|1vpn]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cpx OCA], [http://pdbe.org/5cpx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cpx RCSB], [http://www.ebi.ac.uk/pdbsum/5cpx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cpx ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cpx OCA], [https://pdbe.org/5cpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cpx RCSB], [https://www.ebi.ac.uk/pdbsum/5cpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cpx ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/Q85068_POVM3 Q85068_POVM3]] Forms an icosahedral capsid with a T=7 symmetry.[PIRNR:PIRNR003376]
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[https://www.uniprot.org/uniprot/VP1_POVMP VP1_POVMP] Forms an icosahedral capsid with a T=7 symmetry and a 40 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with VP2 or VP3 proteins. Interacts with terminal alpha(2,3)-linked sialic acids on the cell surface to provide virion attachment to target cell. This attachment induces virion internalization predominantly through caveolin-mediated endocytosis. Once attached, the virion is internalized by caveolin-mediated endocytosis and traffics to the endoplasmic reticulum. Inside the endoplasmic reticulum, the protein folding machinery isomerizes VP1 interpentamer disulfide bonds, thereby triggering initial uncoating. Next, the virion uses the endoplasmic reticulum-associated degradation machinery to probably translocate in the cytosol before reaching the nucleus. Nuclear entry of the viral DNA involves the selective exposure and importin recognition of VP2/Vp3 nuclear localization signal. In late phase of infection, neo-synthesized VP1 encapsulates replicated genomic DNA in the nucleus, and participates in rearranging nucleosomes around the viral DNA (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
<div class="pdbe-citations 5cpx" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5cpx" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Buch, M H.C]]
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[[Category: Large Structures]]
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[[Category: Liaci, A M]]
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[[Category: Mus musculus polyomavirus 1]]
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[[Category: Neu, U]]
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[[Category: Buch MHC]]
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[[Category: Stehle, T]]
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[[Category: Liaci AM]]
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[[Category: Carbohydrate complex]]
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[[Category: Neu U]]
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[[Category: Murine polyomavirus]]
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[[Category: Stehle T]]
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[[Category: Viral protein]]
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[[Category: Virus protein]]
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[[Category: Virus-host interaction]]
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Current revision

Crystal structure of murine polyomavirus PTA strain VP1 in complex with the DSLNT glycan

PDB ID 5cpx

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