This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5nxq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:15, 22 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to a stapled Sld5 CIP==
==Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to a stapled Sld5 CIP==
-
<StructureSection load='5nxq' size='340' side='right' caption='[[5nxq]], [[Resolution|resolution]] 2.41&Aring;' scene=''>
+
<StructureSection load='5nxq' size='340' side='right'caption='[[5nxq]], [[Resolution|resolution]] 2.41&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5nxq]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NXQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NXQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5nxq]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NXQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NXQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.413&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=9FZ:'>9FZ</scene>, <scene name='pdbligand=9G2:'>9G2</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9FZ:(2~{S})-2-azanyl-5-(4-methyl-1,2,3-triazol-1-yl)pentanoic+acid'>9FZ</scene>, <scene name='pdbligand=9G2:(2~{S})-2-azanyl-5-(4-ethyl-1,2,3-triazol-1-yl)pentanoic+acid'>9G2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4c8s|4c8s]], [[4c95|4c95]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nxq OCA], [https://pdbe.org/5nxq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nxq RCSB], [https://www.ebi.ac.uk/pdbsum/5nxq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nxq ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nxq OCA], [http://pdbe.org/5nxq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nxq RCSB], [http://www.ebi.ac.uk/pdbsum/5nxq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nxq ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CTF4_YEAST CTF4_YEAST]] Accessory factor for DNA replication. It plays a role in accurately duplicating the genome in vivo.
+
[https://www.uniprot.org/uniprot/CTF4_YEAST CTF4_YEAST] Accessory factor for DNA replication. It plays a role in accurately duplicating the genome in vivo.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pellegrini, L]]
+
[[Category: Large Structures]]
-
[[Category: Wu, Y]]
+
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Adaptor protein]]
+
[[Category: Pellegrini L]]
-
[[Category: Beta-propeller domain]]
+
[[Category: Wu Y]]
-
[[Category: Dna replication]]
+
-
[[Category: Replication]]
+

Current revision

Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to a stapled Sld5 CIP

PDB ID 5nxq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools