5or0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5or0" [edit=sysop:move=sysop])
Current revision (06:04, 19 June 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==NMR derived model of the 5'-splice site of SMN2 in complex with the 5'-end of U1 snRNA==
==NMR derived model of the 5'-splice site of SMN2 in complex with the 5'-end of U1 snRNA==
-
<StructureSection load='5or0' size='340' side='right' caption='[[5or0]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+
<StructureSection load='5or0' size='340' side='right'caption='[[5or0]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5or0]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OR0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5or0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OR0 FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5or0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5or0 OCA], [http://pdbe.org/5or0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5or0 RCSB], [http://www.ebi.ac.uk/pdbsum/5or0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5or0 ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5or0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5or0 OCA], [https://pdbe.org/5or0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5or0 RCSB], [https://www.ebi.ac.uk/pdbsum/5or0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5or0 ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Small molecule splicing modifiers have been previously described that target the general splicing machinery and thus have low specificity for individual genes. Several potent molecules correcting the splicing deficit of the SMN2 (survival of motor neuron 2) gene have been identified and these molecules are moving towards a potential therapy for spinal muscular atrophy (SMA). Here by using a combination of RNA splicing, transcription, and protein chemistry techniques, we show that these molecules directly bind to two distinct sites of the SMN2 pre-mRNA, thereby stabilizing a yet unidentified ribonucleoprotein (RNP) complex that is critical to the specificity of these small molecules for SMN2 over other genes. In addition to the therapeutic potential of these molecules for treatment of SMA, our work has wide-ranging implications in understanding how small molecules can interact with specific quaternary RNA structures.
 +
 +
Binding to SMN2 pre-mRNA-protein complex elicits specificity for small molecule splicing modifiers.,Sivaramakrishnan M, McCarthy KD, Campagne S, Huber S, Meier S, Augustin A, Heckel T, Meistermann H, Hug MN, Birrer P, Moursy A, Khawaja S, Schmucki R, Berntenis N, Giroud N, Golling S, Tzouros M, Banfai B, Duran-Pacheco G, Lamerz J, Hsiu Liu Y, Luebbers T, Ratni H, Ebeling M, Clery A, Paushkin S, Krainer AR, Allain FH, Metzger F Nat Commun. 2017 Nov 14;8(1):1476. doi: 10.1038/s41467-017-01559-4. PMID:29133793<ref>PMID:29133793</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5or0" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Allain, F H]]
+
[[Category: Homo sapiens]]
-
[[Category: Campagne, S]]
+
[[Category: Large Structures]]
-
[[Category: Clery, A]]
+
[[Category: Allain FH]]
-
[[Category: 5'-splice site]]
+
[[Category: Campagne S]]
-
[[Category: Rna]]
+
[[Category: Clery A]]
-
[[Category: Small muscular atrophy]]
+
-
[[Category: Smn2]]
+

Current revision

NMR derived model of the 5'-splice site of SMN2 in complex with the 5'-end of U1 snRNA

PDB ID 5or0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools