1wi2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:40, 9 May 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wi2.jpg|left|200px]]
 
-
{{Structure
+
==Solution structure of the PDZ domain from RIKEN cDNA 2700099C19==
-
|PDB= 1wi2 |SIZE=350|CAPTION= <scene name='initialview01'>1wi2</scene>
+
<StructureSection load='1wi2' size='340' side='right'caption='[[1wi2]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1wi2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WI2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WI2 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= RIKEN cDNA 2700099C19 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wi2 OCA], [https://pdbe.org/1wi2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wi2 RCSB], [https://www.ebi.ac.uk/pdbsum/1wi2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wi2 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wi2 TOPSAN]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wi2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wi2 OCA], [http://www.ebi.ac.uk/pdbsum/1wi2 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1wi2 RCSB]</span>
+
[https://www.uniprot.org/uniprot/PDZ11_MOUSE PDZ11_MOUSE]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Solution structure of the PDZ domain from RIKEN cDNA 2700099C19'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/1wi2_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1WI2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WI2 OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wi2 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Single protein]]
+
[[Category: Hayashi F]]
-
[[Category: Hayashi, F.]]
+
[[Category: Kigawa T]]
-
[[Category: Kigawa, T.]]
+
[[Category: Seimiya K]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Tomizawa T]]
-
[[Category: Seimiya, K.]]
+
[[Category: Yokoyama S]]
-
[[Category: Tomizawa, T.]]
+
[[Category: Yoshida M]]
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Yoshida, M.]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:36:33 2008''
+

Current revision

Solution structure of the PDZ domain from RIKEN cDNA 2700099C19

PDB ID 1wi2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools