5mgl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:43, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal Structure of BAZ2A bromodomain in complex with 4-chloropyridine derivative 3==
==Crystal Structure of BAZ2A bromodomain in complex with 4-chloropyridine derivative 3==
-
<StructureSection load='5mgl' size='340' side='right' caption='[[5mgl]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
+
<StructureSection load='5mgl' size='340' side='right'caption='[[5mgl]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5mgl]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MGL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MGL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5mgl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MGL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MGL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7MU:4-CHLORANYL-~{N}-METHYL-PYRIDINE-2-CARBOXAMIDE'>7MU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.651&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5mgg|5mgg]], [[5mgj|5mgj]], [[5mgk|5mgk]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7MU:4-CHLORANYL-~{N}-METHYL-PYRIDINE-2-CARBOXAMIDE'>7MU</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mgl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mgl OCA], [http://pdbe.org/5mgl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mgl RCSB], [http://www.ebi.ac.uk/pdbsum/5mgl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mgl ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mgl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mgl OCA], [https://pdbe.org/5mgl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mgl RCSB], [https://www.ebi.ac.uk/pdbsum/5mgl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mgl ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BAZ2A_HUMAN BAZ2A_HUMAN]] Essential component of the NoRC (nucleolar remodeling complex) complex, a complex that mediates silencing of a fraction of rDNA by recruiting histone-modifying enzymes and DNA methyltransferases, leading to heterochromatin formation and transcriptional silencing. In the complex, it plays a central role by being recruited to rDNA and by targeting chromatin modifying enzymes such as HDAC1, leading to repress RNA polymerase I transcription. Recruited to rDNA via its interaction with TTF1 and its ability to recognize and bind histone H4 acetylated on 'Lys-16' (H4K16ac), leading to deacetylation of H4K5ac, H4K8ac, H4K12ac but not H4K16ac. Specifically binds pRNAs, 150-250 nucleotide RNAs that are complementary in sequence to the rDNA promoter; pRNA-binding is required for heterochromatin formation and rDNA silencing (By similarity).
+
[https://www.uniprot.org/uniprot/BAZ2A_HUMAN BAZ2A_HUMAN] Essential component of the NoRC (nucleolar remodeling complex) complex, a complex that mediates silencing of a fraction of rDNA by recruiting histone-modifying enzymes and DNA methyltransferases, leading to heterochromatin formation and transcriptional silencing. In the complex, it plays a central role by being recruited to rDNA and by targeting chromatin modifying enzymes such as HDAC1, leading to repress RNA polymerase I transcription. Recruited to rDNA via its interaction with TTF1 and its ability to recognize and bind histone H4 acetylated on 'Lys-16' (H4K16ac), leading to deacetylation of H4K5ac, H4K8ac, H4K12ac but not H4K16ac. Specifically binds pRNAs, 150-250 nucleotide RNAs that are complementary in sequence to the rDNA promoter; pRNA-binding is required for heterochromatin formation and rDNA silencing (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5mgl" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5mgl" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Bromodomain adjacent to zinc finger 3D structures|Bromodomain adjacent to zinc finger 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Caflisch, A]]
+
[[Category: Homo sapiens]]
-
[[Category: Lolli, G]]
+
[[Category: Large Structures]]
-
[[Category: Spiliotopoulos, D]]
+
[[Category: Caflisch A]]
-
[[Category: Four helical bundle]]
+
[[Category: Lolli G]]
-
[[Category: Transcription]]
+
[[Category: Spiliotopoulos D]]

Current revision

Crystal Structure of BAZ2A bromodomain in complex with 4-chloropyridine derivative 3

PDB ID 5mgl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5mgl"
Personal tools