1ws0

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[[Image:1ws0.gif|left|200px]]
 
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{{Structure
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==Structure analysis of peptide deformylase from Bacillus cereus==
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|PDB= 1ws0 |SIZE=350|CAPTION= <scene name='initialview01'>1ws0</scene>, resolution 1.70&Aring;
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<StructureSection load='1ws0' size='340' side='right'caption='[[1ws0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>
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<table><tr><td colspan='2'>[[1ws0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WS0 FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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|GENE= DEF1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ws0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ws0 OCA], [https://pdbe.org/1ws0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ws0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ws0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ws0 ProSAT]</span></td></tr>
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|RELATEDENTRY=[[1ws1|1WS1]]
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ws0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ws0 OCA], [http://www.ebi.ac.uk/pdbsum/1ws0 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ws0 RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/DEF1_BACCR DEF1_BACCR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).
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== Evolutionary Conservation ==
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'''Structure analysis of peptide deformylase from Bacillus cereus'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ws/1ws0_consurf.spt"</scriptWhenChecked>
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1WS0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WS0 OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==Reference==
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</jmolCheckbox>
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Structure analysis of peptide deformylase from Bacillus cereus., Moon JH, Park JK, Kim EE, Proteins. 2005 Oct 1;61(1):217-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16049914 16049914]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ws0 ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Bacillus cereus]]
[[Category: Bacillus cereus]]
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[[Category: Peptide deformylase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Kim EE]]
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[[Category: Kim, E E.]]
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[[Category: Moon JH]]
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[[Category: Moon, J H.]]
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[[Category: Park JK]]
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[[Category: Park, J K.]]
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[[Category: alpha + beta topology]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:40:15 2008''
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Current revision

Structure analysis of peptide deformylase from Bacillus cereus

PDB ID 1ws0

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