This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1gyc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:10, 13 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==CRYSTAL STRUCTURE DETERMINATION AT ROOM TEMPERATURE OF A LACCASE FROM TRAMETES VERSICOLOR IN ITS OXIDISED FORM CONTAINING A FULL COMPLEMENT OF COPPER IONS==
==CRYSTAL STRUCTURE DETERMINATION AT ROOM TEMPERATURE OF A LACCASE FROM TRAMETES VERSICOLOR IN ITS OXIDISED FORM CONTAINING A FULL COMPLEMENT OF COPPER IONS==
-
<StructureSection load='1gyc' size='340' side='right' caption='[[1gyc]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='1gyc' size='340' side='right'caption='[[1gyc]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1gyc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trametes_versicolor Trametes versicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1gyc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trametes_versicolor Trametes versicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GYC FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Laccase Laccase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.2 1.10.3.2] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyc OCA], [http://pdbe.org/1gyc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gyc RCSB], [http://www.ebi.ac.uk/pdbsum/1gyc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyc ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyc OCA], [https://pdbe.org/1gyc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gyc RCSB], [https://www.ebi.ac.uk/pdbsum/1gyc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyc ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LAC2_TRAVE LAC2_TRAVE]] Lignin degradation and detoxification of lignin-derived products (Probable).
+
[https://www.uniprot.org/uniprot/LAC2_TRAVE LAC2_TRAVE] Lignin degradation and detoxification of lignin-derived products (Probable).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gyc_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gyc_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 29:
</div>
</div>
<div class="pdbe-citations 1gyc" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 1gyc" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Laccase 3D structures|Laccase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Laccase]]
+
[[Category: Large Structures]]
[[Category: Trametes versicolor]]
[[Category: Trametes versicolor]]
-
[[Category: Antorini, M]]
+
[[Category: Antorini M]]
-
[[Category: Choinowski, T]]
+
[[Category: Choinowski T]]
-
[[Category: Piontek, K]]
+
[[Category: Piontek K]]
-
[[Category: Diphenol oxidase]]
+
-
[[Category: Lignin degradation]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

CRYSTAL STRUCTURE DETERMINATION AT ROOM TEMPERATURE OF A LACCASE FROM TRAMETES VERSICOLOR IN ITS OXIDISED FORM CONTAINING A FULL COMPLEMENT OF COPPER IONS

PDB ID 1gyc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools