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5nrp

From Proteopedia

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Beta domain of human transcobalamin bound to cobinamide

Structural highlights

5nrp is a 1 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.569Å
Ligands:	,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

TCO2_HUMAN Defects in TCN2 are the cause of transcobalamin II deficiency (TCN2 deficiency) [MIM:275350. This results in various forms of anemia.

Function

TCO2_HUMAN Primary vitamin B12-binding and transport protein. Delivers cobalamin to cells.

Publication Abstract from PubMed

Vitamin B12 (cyanocobalamin, CNCbl) is an essential cofactor-precursor for two biochemical reactions in humans. When ingested, cobalamins (Cbl) are transported via a multistep transport system into the bloodstream, where the soluble protein transcobalamin (TC) binds Cbl and the complex is taken up into the cells via receptor mediated endocytosis. Crystal structures of TC in complex with CNCbl have been solved previously. However, the initial steps of holo-TC assembly have remained elusive. Here, we present four crystal structures of the beta domain of human TC (TC-beta) in different substrate-bound states. These include the apo and CNCbl-bound states, providing insight into the early steps of holo-TC assembly. We found that in vitro assembly of TC-alpha and TC-beta to a complex was Cbl-dependent. We also determined the structure of TC-beta in complex with cobinamide (Cbi), an alternative substrate, shedding light on the specificity of TC. We finally determined the structure of TC-beta in complex with an inhibitory antivitamin B12 (anti-B12). We used this structure to model the binding of anti-B12 into full-length holo-TC and could rule out that the inhibitory function of anti-B12 was based on an inability to form a functional complex with TC.

Structure of the human transcobalamin beta domain in four distinct states.,Bloch JS, Ruetz M, Krautler B, Locher KP PLoS One. 2017 Sep 14;12(9):e0184932. doi: 10.1371/journal.pone.0184932., eCollection 2017. PMID:28910388^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Bloch JS, Ruetz M, Krautler B, Locher KP. Structure of the human transcobalamin beta domain in four distinct states. PLoS One. 2017 Sep 14;12(9):e0184932. doi: 10.1371/journal.pone.0184932., eCollection 2017. PMID:28910388 doi:http://dx.doi.org/10.1371/journal.pone.0184932

1 Structural highlights
2 Disease
3 Function
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5nrp"

Categories: Homo sapiens | Large Structures | Bloch JS | Locher KP

@@ Line 1: / Line 1: @@
 ==Beta domain of human transcobalamin bound to cobinamide==
-<StructureSection load='5nrp' size='340' side='right' caption='[[5nrp]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
+<StructureSection load='5nrp' size='340' side='right'caption='[[5nrp]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5nrp]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NRP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NRP FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5nrp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NRP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NRP FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBY:COB(II)INAMIDE'>CBY</scene>, <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.569&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nrp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nrp OCA], [http://pdbe.org/5nrp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nrp RCSB], [http://www.ebi.ac.uk/pdbsum/5nrp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nrp ProSAT]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CBY:COB(II)INAMIDE'>CBY</scene>, <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nrp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nrp OCA], [https://pdbe.org/5nrp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nrp RCSB], [https://www.ebi.ac.uk/pdbsum/5nrp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nrp ProSAT]</span></td></tr>
 </table>
 == Disease ==
-[[http://www.uniprot.org/uniprot/TCO2_HUMAN TCO2_HUMAN]] Defects in TCN2 are the cause of transcobalamin II deficiency (TCN2 deficiency) [MIM:[http://omim.org/entry/275350 275350]]. This results in various forms of anemia.
+[https://www.uniprot.org/uniprot/TCO2_HUMAN TCO2_HUMAN] Defects in TCN2 are the cause of transcobalamin II deficiency (TCN2 deficiency) [MIM:[https://omim.org/entry/275350 275350]. This results in various forms of anemia.
 == Function ==
-[[http://www.uniprot.org/uniprot/TCO2_HUMAN TCO2_HUMAN]] Primary vitamin B12-binding and transport protein. Delivers cobalamin to cells.
+[https://www.uniprot.org/uniprot/TCO2_HUMAN TCO2_HUMAN] Primary vitamin B12-binding and transport protein. Delivers cobalamin to cells.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 24: / Line 25: @@
 __TOC__
 </StructureSection>
-[[Category: Bloch, J S]]
+[[Category: Homo sapiens]]
-[[Category: Locher, K P]]
+[[Category: Large Structures]]
-[[Category: Alternative substrate]]
+[[Category: Bloch JS]]
-[[Category: Binding protein]]
+[[Category: Locher KP]]
-[[Category: Bloodstream]]
-[[Category: Substrate bound]]
-[[Category: Transport protein]]

5nrp

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Current revision

Beta domain of human transcobalamin bound to cobinamide

Structural highlights

Disease

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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