This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wye

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:35, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wye.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of 2-keto-3-deoxygluconate kinase (form 1) from Sulfolobus Tokodaii==
-
|PDB= 1wye |SIZE=350|CAPTION= <scene name='initialview01'>1wye</scene>, resolution 2.80&Aring;
+
<StructureSection load='1wye' size='340' side='right'caption='[[1wye]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1wye]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WYE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WYE FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/2-dehydro-3-deoxygluconokinase 2-dehydro-3-deoxygluconokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.45 2.7.1.45] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wye FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wye OCA], [https://pdbe.org/1wye PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wye RCSB], [https://www.ebi.ac.uk/pdbsum/1wye PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wye ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wye FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wye OCA], [http://www.ebi.ac.uk/pdbsum/1wye PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1wye RCSB]</span>
+
[https://www.uniprot.org/uniprot/KDGK_SULTO KDGK_SULTO] Involved in the degradation of glucose via the semi-phosphorylative Entner-Doudoroff pathway. Catalyzes the phosphorylation of 2-keto-3-deoxygluconate (KDG) to produce 2-keto-3-deoxy-6-phosphogluconate (KDPG). Can also use GTP, but not ADP or AMP, as a phosphoryl donor and 2-keto-D-gluconate (KG) as a phosphoryl acceptor.<ref>PMID:17407821</ref>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of 2-keto-3-deoxygluconate kinase (form 1) from Sulfolobus Tokodaii'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wy/1wye_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1WYE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WYE OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: 2-dehydro-3-deoxygluconokinase]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wye ConSurf].
-
[[Category: Sulfolobus tokodaii]]
+
<div style="clear:both"></div>
-
[[Category: Hossain, M T.]]
+
== References ==
-
[[Category: Koike, I.]]
+
<references/>
-
[[Category: Sekiguchi, T.]]
+
__TOC__
-
[[Category: Suzuki, K.]]
+
</StructureSection>
-
[[Category: Takenaka, A.]]
+
[[Category: Large Structures]]
-
[[Category: Toyoda, T]]
+
[[Category: Sulfurisphaera tokodaii str. 7]]
-
[[Category: archea]]
+
[[Category: Hossain MT]]
-
[[Category: sulfolobus tokokai]]
+
[[Category: Koike I]]
-
 
+
[[Category: Sekiguchi T]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:42:44 2008''
+
[[Category: Suzuki K]]
 +
[[Category: Takenaka A]]
 +
[[Category: Toyoda T]]

Current revision

Crystal structure of 2-keto-3-deoxygluconate kinase (form 1) from Sulfolobus Tokodaii

PDB ID 1wye

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1wye"
Personal tools