This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1x0a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:03, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1x0a.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8==
-
|PDB= 1x0a |SIZE=350|CAPTION= <scene name='initialview01'>1x0a</scene>, resolution 2.00&Aring;
+
<StructureSection load='1x0a' size='340' side='right'caption='[[1x0a]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>
+
<table><tr><td colspan='2'>[[1x0a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0A FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/L-lactate_dehydrogenase L-lactate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.27 1.1.1.27] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0a OCA], [https://pdbe.org/1x0a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0a RCSB], [https://www.ebi.ac.uk/pdbsum/1x0a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0a ProSAT], [https://www.topsan.org/Proteins/RSGI/1x0a TOPSAN]</span></td></tr>
-
|RELATEDENTRY=[[1vbi|1VBI]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x0a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0a OCA], [http://www.ebi.ac.uk/pdbsum/1x0a PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1x0a RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q53W84_THET8 Q53W84_THET8]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x0/1x0a_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x0a ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8'''
+
==See Also==
-
 
+
*[[Lactate dehydrogenase 3D structures|Lactate dehydrogenase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1X0A is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0A OCA].
+
[[Category: Large Structures]]
-
[[Category: L-lactate dehydrogenase]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Single protein]]
+
[[Category: Kunishima N]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Mizutani H]]
-
[[Category: Kunishima, N.]]
+
-
[[Category: Mizutani, H.]]
+
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: malate dehydrogenase]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:43:16 2008''
+

Current revision

Crystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8

PDB ID 1x0a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1x0a"
Personal tools