5o9w

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(New page: '''Unreleased structure''' The entry 5o9w is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures)
Current revision (09:38, 6 December 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5o9w is ON HOLD until Paper Publication
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==Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with 2-oxoglutarate==
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<StructureSection load='5o9w' size='340' side='right'caption='[[5o9w]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5o9w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Papaver_somniferum Papaver somniferum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O9W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5O9W FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5o9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o9w OCA], [https://pdbe.org/5o9w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5o9w RCSB], [https://www.ebi.ac.uk/pdbsum/5o9w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5o9w ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DIOX1_PAPSO DIOX1_PAPSO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum (opium poppy), which belongs to the non-heme 2-oxoglutarate/Fe(II)-dependent dioxygenases (ODD) family, is a key enzyme in the morphine biosynthesis pathway. Initially, T6ODM was characterized as an enzyme catalyzing O-demethylation of thebaine to neopinone and oripavine to morphinone. However, the substrate range of T6ODM was recently expanded to a number of various benzylisoquinoline alkaloids. Here, we present crystal structures of T6ODM in complexes with 2-oxoglutarate (T6ODM:2OG, PDB: 5O9W) and succinate (T6ODM:SIN, PDB: 5O7Y). Both metal and 2OG binding sites display similarity to other proteins from the ODD family, but T6ODM is characterized by an exceptionally large substrate binding cavity, whose volume can partially explain the promiscuity of this enzyme. Moreover, the size of the cavity allows for binding of multiple molecules at once, posing a question about the substrate-driven specificity of the enzyme.
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Authors:
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Crystal structure of thebaine 6-O-demethylase from the morphine biosynthesis pathway.,Kluza A, Niedzialkowska E, Kurpiewska K, Wojdyla Z, Quesne M, Kot E, Porebski PJ, Borowski T J Struct Biol. 2018 Feb 8. pii: S1047-8477(18)30022-4. doi:, 10.1016/j.jsb.2018.01.007. PMID:29408320<ref>PMID:29408320</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5o9w" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Papaver somniferum]]
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[[Category: Borowski T]]
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[[Category: Kluza A]]
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[[Category: Kurpiewska K]]
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[[Category: Niedzialkowska E]]
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[[Category: Porebski PJ]]

Current revision

Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with 2-oxoglutarate

PDB ID 5o9w

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