5w2b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5w2b" [edit=sysop:move=sysop])
Current revision (04:54, 21 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5w2b is ON HOLD until Paper Publication
+
==Crystal structure of C-terminal domain of Ebola (Reston) nucleoprotein in complex with Fab fragment==
 +
<StructureSection load='5w2b' size='340' side='right'caption='[[5w2b]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5w2b]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Reston_ebolavirus_-_Reston_(1989) Reston ebolavirus - Reston (1989)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5W2B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5W2B FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5w2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5w2b OCA], [https://pdbe.org/5w2b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5w2b RCSB], [https://www.ebi.ac.uk/pdbsum/5w2b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5w2b ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NCAP_EBORR NCAP_EBORR] Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid and serves as template for transcription and replication. During replication, encapsidation by NP is coupled to RNA synthesis and all replicative products are resistant to nucleases (By similarity).
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The vast majority of platforms for the detection of viral or bacterial antigens rely on immunoassays, typically ELISA or sandwich ELISA, that are contingent on the availability of suitable monoclonal antibodies (mAbs). This is a major bottleneck, since the generation and production of mAbs is time-consuming and expensive. Synthetic antibody fragments (sFabs) generated by phage-display selection offer an alternative with many advantages over Fabs obtained from natural antibodies using hybridoma technology. Unlike mAbs, sFabs are generated using phage display, allowing selection for binding to specific strains or for pan-specificity, for identification of structural epitopes or unique protein conformations and even for complexes. Further, they can easily be produced in Escherichia coli in large quantities and engineered for purposes of detection technologies and other applications. Here, the use of phage-display selection to generate a pan-specific Fab (MJ20), based on a Herceptin Fab scaffold, with the ability to bind selectively and with high affinity to the C-terminal domains of the nucleoproteins (NPs) from all five known strains of the Ebola virus is reported. The high-resolution crystal structure of the complex of MJ20 with the antigen from the Bundibugyo strain of the Ebola virus reveals the basis for pan-specificity and illustrates how the phage-display technology can be used to manufacture suitable Fabs for use in diagnostic or therapeutic applications.
-
Authors: Radwanska, M.J., Derewenda, U., Kossiakoff, A.A., Derewenda, Z.S.
+
The structure of the C-terminal domain of the nucleoprotein from the Bundibugyo strain of the Ebola virus in complex with a pan-specific synthetic Fab.,Radwanska MJ, Jaskolowski M, Davydova E, Derewenda U, Miyake T, Engel DA, Kossiakoff AA, Derewenda ZS Acta Crystallogr D Struct Biol. 2018 Jul 1;74(Pt 7):681-689. doi: , 10.1107/S2059798318007878. Epub 2018 Jun 27. PMID:29968677<ref>PMID:29968677</ref>
-
Description: Crystal structure of C-terminal domain of Ebola (Reston) nucleoprotein in complex with Fab fragment
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Derewenda, Z.S]]
+
<div class="pdbe-citations 5w2b" style="background-color:#fffaf0;"></div>
-
[[Category: Derewenda, U]]
+
 
-
[[Category: Kossiakoff, A.A]]
+
==See Also==
-
[[Category: Radwanska, M.J]]
+
*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Derewenda U]]
 +
[[Category: Derewenda ZS]]
 +
[[Category: Kossiakoff AA]]
 +
[[Category: Radwanska MJ]]

Current revision

Crystal structure of C-terminal domain of Ebola (Reston) nucleoprotein in complex with Fab fragment

PDB ID 5w2b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools