5wj8

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(New page: '''Unreleased structure''' The entry 5wj8 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures)
Current revision (14:14, 4 October 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5wj8 is ON HOLD until Paper Publication
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==Crystal Structure of Human Cadherin-23 EC13-14==
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<StructureSection load='5wj8' size='340' side='right'caption='[[5wj8]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5wj8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WJ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WJ8 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wj8 OCA], [https://pdbe.org/5wj8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wj8 RCSB], [https://www.ebi.ac.uk/pdbsum/5wj8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wj8 ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/CAD23_HUMAN CAD23_HUMAN] Defects in CDH23 are the cause of Usher syndrome type 1D (USH1D) [MIM:[https://omim.org/entry/601067 601067]. USH is a genetically heterogeneous condition characterized by the association of retinitis pigmentosa and sensorineural deafness. Age at onset and differences in auditory and vestibular function distinguish Usher syndrome type 1 (USH1), Usher syndrome type 2 (USH2) and Usher syndrome type 3 (USH3). USH1 is characterized by profound congenital sensorineural deafness, absent vestibular function and prepubertal onset of progressive retinitis pigmentosa leading to blindness.<ref>PMID:11138009</ref> <ref>PMID:12075507</ref> <ref>PMID:15660226</ref> <ref>PMID:15537665</ref> <ref>PMID:16679490</ref> <ref>PMID:18429043</ref> Defects in CDH23 are a cause of Usher syndrome type 1D/F (USH1DF) [MIM:[https://omim.org/entry/601067 601067]. USH1DF patients are heterozygous for mutations in CDH23 and PCDH15, indicating a digenic inheritance pattern.<ref>PMID:15537665</ref> Defects in CDH23 are the cause of deafness autosomal recessive type 12 (DFNB12) [MIM:[https://omim.org/entry/601386 601386]. DFNB12 is a form of sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information.<ref>PMID:12075507</ref> <ref>PMID:16679490</ref> <ref>PMID:11090341</ref> <ref>PMID:12522556</ref> <ref>PMID:15829536</ref> <ref>PMID:17850630</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/CAD23_HUMAN CAD23_HUMAN] Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells. CDH23 is required for establishing and/or maintaining the proper organization of the stereocilia bundle of hair cells in the cochlea and the vestibule during late embryonic/early postnatal development. It is part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cadherin-23 (CDH23) is an essential component of hair-cell tip links, fine filaments that mediate inner-ear mechanotransduction. The extracellular domain of CDH23 forms about three-fourths of the tip link with 27 extracellular cadherin (EC) repeats that are structurally similar but not identical to each other. Calcium (Ca(2+)) coordination at the EC linker regions is key for tip-link elasticity and function. There are approximately 116 sites in CDH23 affected by deafness-causing mutations, many of which alter conserved Ca(2+)-binding residues. Here we present crystal structures showing 18 CDH23 EC repeats, including the most and least conserved, a fragment carrying disease mutations, and EC repeats with non-canonical Ca(2+)-binding motif sequences and unusual secondary structure. Complementary experiments show deafness mutations' effects on stability and affinity for Ca(2+). Additionally, a model of nine contiguous CDH23 EC repeats reveals helicity and potential parallel dimerization faces. Overall, our studies provide detailed structural insight into CDH23 function in mechanotransduction.
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Authors:
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Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness.,Jaiganesh A, De-la-Torre P, Patel AA, Termine DJ, Velez-Cortes F, Chen C, Sotomayor M Structure. 2018 Jun 27. pii: S0969-2126(18)30209-0. doi:, 10.1016/j.str.2018.06.003. PMID:30033219<ref>PMID:30033219</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5wj8" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Cadherin 3D structures|Cadherin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Conghui C]]
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[[Category: De-la-Torre P]]
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[[Category: Sotomayor M]]
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[[Category: Velez-Cortes F]]

Current revision

Crystal Structure of Human Cadherin-23 EC13-14

PDB ID 5wj8

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