5y4o

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(New page: '''Unreleased structure''' The entry 5y4o is ON HOLD Authors: Zhang, Y., Yu, J. Description: Cryo-EM structure of MscS channel, YnaI Category: Unreleased Structures [[Category: Zha...)
Current revision (07:46, 17 October 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5y4o is ON HOLD
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==Cryo-EM structure of MscS channel, YnaI==
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<SX load='5y4o' size='340' side='right' viewer='molstar' caption='[[5y4o]], [[Resolution|resolution]] 3.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5y4o]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y4O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y4O FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y4o OCA], [https://pdbe.org/5y4o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y4o RCSB], [https://www.ebi.ac.uk/pdbsum/5y4o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y4o ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/YNAI_ECOLI YNAI_ECOLI] Mechanosensitive channel that protects cells against hypoosmotic stress when highly overexpressed.<ref>PMID:22874652</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Mechanosensitive (MS) channels are extensively studied membrane protein for maintaining intracellular homeostasis through translocating solutes and ions across the membrane, but its mechanisms of channel gating and ion selectivity are largely unknown. Here, we identified the YnaI channel as the Na(+)/K(+) cation-selective MS channel and solved its structure at 3.8 A by cryo-EM single-particle method. YnaI exhibits low conductance among the family of MS channels in E. coli, and shares a similar overall heptamer structure fold with previously studied MscS channels. By combining structural based mutagenesis, quantum mechanical and electrophysiological characterizations, we revealed that ion selective filter formed by seven hydrophobic methionine (YnaI(Met158)) in the transmembrane pore determined ion selectivity, and both ion selectivity and gating of YnaI channel were affected by accompanying anions in solution. Further quantum simulation and functional validation support that the distinct binding energies with various anions to YnaI(Met158) facilitate Na(+)/K(+) pass through, which was defined as binding-block mechanism. Our structural and functional studies provided a new perspective for understanding the mechanism of how MS channels select ions driven by mechanical force.
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Authors: Zhang, Y., Yu, J.
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A binding-block ion selective mechanism revealed by a Na/K selective channel.,Yu J, Zhang B, Zhang Y, Xu CQ, Zhuo W, Ge J, Li J, Gao N, Li Y, Yang M Protein Cell. 2018 Jul;9(7):629-639. doi: 10.1007/s13238-017-0465-8. Epub 2017, Sep 18. PMID:28921397<ref>PMID:28921397</ref>
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Description: Cryo-EM structure of MscS channel, YnaI
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Zhang, Y]]
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<div class="pdbe-citations 5y4o" style="background-color:#fffaf0;"></div>
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[[Category: Yu, J]]
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== References ==
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<references/>
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__TOC__
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</SX>
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[[Category: Escherichia coli O157:H7]]
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[[Category: Large Structures]]
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[[Category: Yu J]]
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[[Category: Zhang Y]]

Current revision

Cryo-EM structure of MscS channel, YnaI

5y4o, resolution 3.80Å

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