5y6q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 5y6q is ON HOLD Authors: Mikami, B., Uchida, H. Description: Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400 [[Category: U...)
Current revision (08:23, 22 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5y6q is ON HOLD
+
==Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400==
 +
<StructureSection load='5y6q' size='340' side='right'caption='[[5y6q]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5y6q]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylobacillus_sp._KY4400 Methylobacillus sp. KY4400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y6Q FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=MCN:PTERIN+CYTOSINE+DINUCLEOTIDE'>MCN</scene>, <scene name='pdbligand=MOS:DIOXOTHIOMOLYBDENUM(VI)+ION'>MOS</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y6q OCA], [https://pdbe.org/5y6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y6q RCSB], [https://www.ebi.ac.uk/pdbsum/5y6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y6q ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q84IY0_9PROT Q84IY0_9PROT]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Hetero-trimeric aldehyde oxidases of bacterial origin, which use O2 to catalyse the oxidation of various aldehydes but not those of aromatic N-heterocycles, belong to the xanthine oxidase family. In the present study, the crystal structure of a recombinant aldehyde oxidase from Methylobacillus sp. KY4400 (Mb-AOX) was determined at 2.5 A resolution. The structures of its subunits resemble those of the corresponding subunits or domains of other structurally characterised enzymes belonging to the family, and include a [4Fe-4S] cluster in the medium subunit like that found in Escherichia coli periplasmic aldehyde oxidoreductase (EP-AOR). A funnel leading to the si-face of the isoalloxazine ring of FAD, which is narrower than those in mouse liver AOX3 and human AOX1, is also present and it is even narrower than that in EP-AOR. The environment surrounding the ring in Mb-AOX and EP-AOR is subtly different, which might account for their different abilities to use O2. A remarkable characteristic of the Mo catalytic centre in Mb-AOX is a tryptophan situated near the centre instead of the alanine present in other xanthine oxidase family members. The tryptophan residue together with other residue differences might play an important role in binding to aldehydes such as n-heptylaldehyde in Mb-AOX.
-
Authors: Mikami, B., Uchida, H.
+
Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400.,Uchida H, Mikami B, Yamane-Tanabe A, Ito A, Hirano K, Oki M J Biochem. 2018 Jan 8. pii: 4793238. doi: 10.1093/jb/mvy004. PMID:29319807<ref>PMID:29319807</ref>
-
Description: Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Mikami, B]]
+
<div class="pdbe-citations 5y6q" style="background-color:#fffaf0;"></div>
-
[[Category: Uchida, H]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Methylobacillus sp. KY4400]]
 +
[[Category: Mikami B]]
 +
[[Category: Uchida H]]

Current revision

Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400

PDB ID 5y6q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools