1xtl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:43, 23 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xtl.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of P104H mutant of SOD-like protein from Bacillus subtilis.==
-
|PDB= 1xtl |SIZE=350|CAPTION= <scene name='initialview01'>1xtl</scene>, resolution 2.00&Aring;
+
<StructureSection load='1xtl' size='340' side='right'caption='[[1xtl]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[1xtl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XTL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XTL FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xtl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xtl OCA], [https://pdbe.org/1xtl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xtl RCSB], [https://www.ebi.ac.uk/pdbsum/1xtl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xtl ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1s4i|1S4I]], [[1xtm|1XTM]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xtl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xtl OCA], [http://www.ebi.ac.uk/pdbsum/1xtl PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1xtl RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/YOJM_BACSU YOJM_BACSU]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of P104H mutant of SOD-like protein from Bacillus subtilis.'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Overview==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xt/1xtl_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xtl ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
It is known that several prokaryotic protein sequences, characterized by high homology with the eukaryotic Cu,ZnSODs, lack some of the metal ligands. In the present work, we have stepwise reintroduced the two missing copper ligands in the SOD-like protein of Bacillus subtilis, through site-directed mutagenesis. The mutant with three out of the four His that bind copper is not active, whereas the fully reconstituted mutant displays an activity of about 10% that of human Cu,ZnSOD. The mutated proteins have been characterized in solution and in the solid state. In solution, the proteins experience conformational disorder, which is believed to be partly responsible for the decreased enzymatic activity and sheds light on the tendency of several human SOD mutants to introduce mobility in the protein frame. In the crystal, on the contrary, the protein has a well-defined conformation, giving rise to dimers through the coordination of an exogenous zinc ion. The catalytic properties of the double mutant, which might be regarded as a step in an artificial evolution from a nonactive SOD to a fully functioning enzyme, are discussed on the basis of the structural and dynamical properties.
It is known that several prokaryotic protein sequences, characterized by high homology with the eukaryotic Cu,ZnSODs, lack some of the metal ligands. In the present work, we have stepwise reintroduced the two missing copper ligands in the SOD-like protein of Bacillus subtilis, through site-directed mutagenesis. The mutant with three out of the four His that bind copper is not active, whereas the fully reconstituted mutant displays an activity of about 10% that of human Cu,ZnSOD. The mutated proteins have been characterized in solution and in the solid state. In solution, the proteins experience conformational disorder, which is believed to be partly responsible for the decreased enzymatic activity and sheds light on the tendency of several human SOD mutants to introduce mobility in the protein frame. In the crystal, on the contrary, the protein has a well-defined conformation, giving rise to dimers through the coordination of an exogenous zinc ion. The catalytic properties of the double mutant, which might be regarded as a step in an artificial evolution from a nonactive SOD to a fully functioning enzyme, are discussed on the basis of the structural and dynamical properties.
-
==About this Structure==
+
From an inactive prokaryotic SOD homologue to an active protein through site-directed mutagenesis.,Banci L, Benvenuti M, Bertini I, Cabelli DE, Calderone V, Fantoni A, Mangani S, Migliardi M, Viezzoli MS J Am Chem Soc. 2005 Sep 28;127(38):13287-92. PMID:16173759<ref>PMID:16173759</ref>
-
1XTL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XTL OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
From an inactive prokaryotic SOD homologue to an active protein through site-directed mutagenesis., Banci L, Benvenuti M, Bertini I, Cabelli DE, Calderone V, Fantoni A, Mangani S, Migliardi M, Viezzoli MS, J Am Chem Soc. 2005 Sep 28;127(38):13287-92. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16173759 16173759]
+
</div>
 +
<div class="pdbe-citations 1xtl" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Banci, L.]]
+
[[Category: Banci L]]
-
[[Category: Benvenuti, M.]]
+
[[Category: Benvenuti M]]
-
[[Category: Bertini, I.]]
+
[[Category: Bertini I]]
-
[[Category: Calderone, V.]]
+
[[Category: Calderone V]]
-
[[Category: Fantoni, A.]]
+
[[Category: Fantoni A]]
-
[[Category: Mangani, S.]]
+
[[Category: Mangani S]]
-
[[Category: Viezzoli, M S.]]
+
[[Category: Viezzoli MS]]
-
[[Category: cu-zn sod]]
+
-
[[Category: sod]]
+
-
[[Category: sod-like]]
+
-
[[Category: structural genomic]]
+
-
[[Category: superoxide dismutase mutant]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:54:30 2008''
+

Current revision

Crystal structure of P104H mutant of SOD-like protein from Bacillus subtilis.

PDB ID 1xtl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools