This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xvi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:53, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xvi.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of YedP, phosphatase-like domain protein from Escherichia coli K12==
-
|PDB= 1xvi |SIZE=350|CAPTION= <scene name='initialview01'>1xvi</scene>, resolution 2.26&Aring;
+
<StructureSection load='1xvi' size='340' side='right'caption='[[1xvi]], [[Resolution|resolution]] 2.26&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[1xvi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XVI FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Mannosyl-3-phosphoglycerate_phosphatase Mannosyl-3-phosphoglycerate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.70 3.1.3.70] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.26&#8491;</td></tr>
-
|GENE= yedP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3769 COG3769], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK03669 PRK03669]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xvi OCA], [https://pdbe.org/1xvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xvi RCSB], [https://www.ebi.ac.uk/pdbsum/1xvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xvi ProSAT], [https://www.topsan.org/Proteins/MCSG/1xvi TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xvi OCA], [http://www.ebi.ac.uk/pdbsum/1xvi PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1xvi RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/MPGP_ECOLI MPGP_ECOLI]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal Structure of YedP, phosphatase-like domain protein from Escherichia coli K12'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xv/1xvi_consurf.spt"</scriptWhenChecked>
-
1XVI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XVI OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Escherichia coli]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Mannosyl-3-phosphoglycerate phosphatase]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xvi ConSurf].
-
[[Category: Cymborowski, M.]]
+
<div style="clear:both"></div>
-
[[Category: Edwards, A.]]
+
__TOC__
-
[[Category: Joachimiak, A.]]
+
</StructureSection>
-
[[Category: Kim, Y.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: Savchenko, A.]]
+
[[Category: Cymborowski M]]
-
[[Category: Skarina, T.]]
+
[[Category: Edwards A]]
-
[[Category: conserved protein]]
+
[[Category: Joachimiak A]]
-
[[Category: hypothetical protein]]
+
[[Category: Kim Y]]
-
[[Category: mcsg]]
+
[[Category: Savchenko A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Skarina T]]
-
[[Category: phophatase-like domain]]
+
-
[[Category: predicted hydrolase]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: sucrose-6f-phosphate phosphohydrolase (s6pp)]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:55:18 2008''
+

Current revision

Crystal Structure of YedP, phosphatase-like domain protein from Escherichia coli K12

PDB ID 1xvi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xvi"
Personal tools