We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1y1s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:54, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y1s.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uracil and Sulfate Ion at 2.55A Resolution==
-
|PDB= 1y1s |SIZE=350|CAPTION= <scene name='initialview01'>1y1s</scene>, resolution 2.55&Aring;
+
<StructureSection load='1y1s' size='340' side='right'caption='[[1y1s]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=URA:URACIL'>URA</scene>
+
<table><tr><td colspan='2'>[[1y1s]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y1S FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
-
|GENE= UDP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=602 Salmonella typhimurium])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=URA:URACIL'>URA</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1s OCA], [https://pdbe.org/1y1s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y1s RCSB], [https://www.ebi.ac.uk/pdbsum/1y1s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1s ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1sj9|1SJ9]], [[1ryz|1RYZ]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1s OCA], [http://www.ebi.ac.uk/pdbsum/1y1s PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y1s RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/UDP_SALTY UDP_SALTY] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y1/1y1s_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y1s ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uracil and Sulfate Ion at 2.55A Resolution'''
+
==See Also==
-
 
+
*[[Uridine phosphorylase 3D structures|Uridine phosphorylase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1Y1S is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1S OCA].
+
[[Category: Large Structures]]
-
[[Category: Salmonella typhimurium]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Single protein]]
+
[[Category: Betzel C]]
-
[[Category: Uridine phosphorylase]]
+
[[Category: Dontsova MV]]
-
[[Category: Betzel, C.]]
+
[[Category: Ealick SE]]
-
[[Category: Dontsova, M V.]]
+
[[Category: Gabdoulkhakov AG]]
-
[[Category: Ealick, S E.]]
+
[[Category: Kachalova GS]]
-
[[Category: Gabdoulkhakov, A G.]]
+
[[Category: Mikhailov AM]]
-
[[Category: Kachalova, G S.]]
+
-
[[Category: Mikhailov, A M.]]
+
-
[[Category: nucleoside phosphorylase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:57:40 2008''
+

Current revision

Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Uracil and Sulfate Ion at 2.55A Resolution

PDB ID 1y1s

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1y1s"
Personal tools