5mud

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:50, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5mud is ON HOLD until Jan 13 2019
+
==Crystal structure of an amyloidogenic light chain dimer H6==
 +
<StructureSection load='5mud' size='340' side='right'caption='[[5mud]], [[Resolution|resolution]] 2.34&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5mud]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MUD FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.34&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mud OCA], [https://pdbe.org/5mud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mud RCSB], [https://www.ebi.ac.uk/pdbsum/5mud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mud ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Light chain amyloidosis (AL), the most common systemic amyloidosis, is caused by the overproduction and the aggregation of monoclonal immunoglobulin light chains (LC) in target organs. Due to genetic rearrangement and somatic hypermutation, virtually, each AL patient presents a different amyloidogenic LC. Because of such complexity, the fine molecular determinants of LC aggregation propensity and proteotoxicity are, to date, unclear; significantly, their decoding requires investigating large sets of cases. Aiming to achieve generalizable observations, we systematically characterised a pool of thirteen sequence-diverse full length LCs. Eight amyloidogenic LCs were selected as responsible for severe cardiac symptoms in patients; five non-amyloidogenic LCs were isolated from patients affected by multiple myeloma. Our comprehensive approach (consisting of spectroscopic techniques, limited proteolysis, and X-ray crystallography) shows that low fold stability and high protein dynamics correlate with amyloidogenic LCs, while hydrophobicity, structural rearrangements and nature of the LC dimeric association interface (as observed in seven crystal structures here presented) do not appear to play a significant role in defining amyloid propensity. Based on the structural and biophysical data, our results highlight shared properties driving LC amyloid propensity, and these data will be instrumental for the design of synthetic inhibitors of LC aggregation.
-
Authors: Oberti, L., Bacarizo, J., Maritan, M., Rognoni, P., Bolognesi, M., Ricagno, S.
+
Concurrent structural and biophysical traits link with immunoglobulin light chains amyloid propensity.,Oberti L, Rognoni P, Barbiroli A, Lavatelli F, Russo R, Maritan M, Palladini G, Bolognesi M, Merlini G, Ricagno S Sci Rep. 2017 Dec 1;7(1):16809. doi: 10.1038/s41598-017-16953-7. PMID:29196671<ref>PMID:29196671</ref>
-
Description: Crystal structure of an amyloidogenic light chain dimer H6
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Maritan, M]]
+
<div class="pdbe-citations 5mud" style="background-color:#fffaf0;"></div>
-
[[Category: Rognoni, P]]
+
== References ==
-
[[Category: Bacarizo, J]]
+
<references/>
-
[[Category: Oberti, L]]
+
__TOC__
-
[[Category: Ricagno, S]]
+
</StructureSection>
-
[[Category: Bolognesi, M]]
+
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Bacarizo J]]
 +
[[Category: Bolognesi M]]
 +
[[Category: Maritan M]]
 +
[[Category: Oberti L]]
 +
[[Category: Ricagno S]]
 +
[[Category: Rognoni P]]

Current revision

Crystal structure of an amyloidogenic light chain dimer H6

PDB ID 5mud

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools