5yha
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5yha is ON HOLD Authors: Abe, S., Atsumi, K., Yamashita, K., Hirata, K., Mori, H., Ueno, T. Description: Crystal structure of Pd(allyl)/Wild Type P...) |
|||
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of Pd(allyl)/Wild Type Polyhedra== | |
| + | <StructureSection load='5yha' size='340' side='right'caption='[[5yha]], [[Resolution|resolution]] 1.58Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5yha]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori_cypovirus_1 Bombyx mori cypovirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YHA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YHA FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PD:PALLADIUM+ION'>PD</scene>, <scene name='pdbligand=PLL:PALLADIUM(II)+ALLYL+COMPLEX'>PLL</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yha FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yha OCA], [https://pdbe.org/5yha PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yha RCSB], [https://www.ebi.ac.uk/pdbsum/5yha PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yha ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PYHD_CPVBM PYHD_CPVBM] Major component of the virus occlusion bodies, which are large proteinaceous structures (polyhedra), that protect the virus from the outside environment for extended periods until they are ingested by insect larvae. | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The molecular structures of in cell protein crystals containing organometallic Pd(allyl) complexes were determined by performing microfocus X-ray diffraction experiments. The coordination sites in a polyhedrin mutant with deletion of selected amino acid residues located at the interface of the polyhedrin trimer are dramatically altered compared to those of the wild-type composite. | ||
| - | + | Structure of in cell protein crystals containing organometallic complexes.,Abe S, Atsumi K, Yamashita K, Hirata K, Mori H, Ueno T Phys Chem Chem Phys. 2017 Nov 15. doi: 10.1039/c7cp06651a. PMID:29138769<ref>PMID:29138769</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5yha" style="background-color:#fffaf0;"></div> |
| - | [[Category: Abe | + | |
| - | [[Category: | + | ==See Also== |
| - | [[Category: | + | *[[Polyhedrin|Polyhedrin]] |
| - | [[Category: | + | == References == |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bombyx mori cypovirus 1]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Abe S]] | ||
| + | [[Category: Atsumi K]] | ||
| + | [[Category: Hirata K]] | ||
| + | [[Category: Mori H]] | ||
| + | [[Category: Ueno T]] | ||
| + | [[Category: Yamashita K]] | ||
Current revision
Crystal structure of Pd(allyl)/Wild Type Polyhedra
| |||||||||||
