1y3y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:52, 23 August 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y3y.gif|left|200px]]
 
-
{{Structure
+
==TRYPSIN INHIBITOR COMPLEX==
-
|PDB= 1y3y |SIZE=350|CAPTION= <scene name='initialview01'>1y3y</scene>, resolution 1.75&Aring;
+
<StructureSection load='1y3y' size='340' side='right'caption='[[1y3y]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UIR:(1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YL-1-CYCLOPROPYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROLIZIN-4-YL)-BENZAMIDINE'>UIR</scene>
+
<table><tr><td colspan='2'>[[1y3y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y3Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y3Y FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UIR:(1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YL-1-CYCLOPROPYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROLIZIN-4-YL)-BENZAMIDINE'>UIR</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3y OCA], [https://pdbe.org/1y3y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y3y RCSB], [https://www.ebi.ac.uk/pdbsum/1y3y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y3y ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1y3u|1Y3U]], [[1y3v|1Y3V]], [[1y3w|1Y3W]], [[1y3x|1Y3X]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y3y OCA], [http://www.ebi.ac.uk/pdbsum/1y3y PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y3y RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/TRY1_BOVIN TRY1_BOVIN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y3/1y3y_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y3y ConSurf].
 +
<div style="clear:both"></div>
-
'''TRYPSIN INHIBITOR COMPLEX'''
+
==See Also==
-
 
+
*[[Trypsin 3D structures|Trypsin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1Y3Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y3Y OCA].
+
-
 
+
-
==Reference==
+
-
A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates., Fokkens J, Klebe G, Angew Chem Int Ed Engl. 2006 Jan 30;45(6):985-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16374786 16374786]
+
[[Category: Bos taurus]]
[[Category: Bos taurus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Trypsin]]
+
[[Category: Fokkens J]]
-
[[Category: Fokkens, J.]]
+
[[Category: Klebe G]]
-
[[Category: Klebe, G.]]
+
-
[[Category: 6 stranded beta-sheet]]
+
-
[[Category: barrel]]
+
-
[[Category: inhibitor complex]]
+
-
[[Category: trypsin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:58:31 2008''
+

Current revision

TRYPSIN INHIBITOR COMPLEX

PDB ID 1y3y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1y3y"
Personal tools